CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94971

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42400.1	EER94971	AT2G18790.1	22904146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043500_P006	Maize	mitochondrion	73.91	86.16
Zm00001d041158_P001	Maize	cytosol	39.53	81.88
Os01t0753000-01	Rice	cytosol	65.16	78.09
Zm00001d012734_P002	Maize	cytosol	75.94	74.43
TraesCS3D01G291600.1	Wheat	mitochondrion	61.88	72.66
TraesCS3B01G326500.4	Wheat	mitochondrion	62.19	69.1
Zm00001d045641_P001	Maize	cytosol	38.75	64.08
TraesCS3A01G291900.1	Wheat	nucleus	62.5	62.6
HORVU3Hr1G072260.1	Barley	plastid	63.59	61.95
EES18506	Sorghum	nucleus, plastid	56.25	59.11
PGSC0003DMT400058735	Potato	cytosol	28.59	55.29
KRH20362	Soybean	cytosol, nucleus, plastid	40.47	54.18
KRH50133	Soybean	cytosol, nucleus, plastid	40.16	53.88
VIT_10s0003g00500.t01	Wine grape	nucleus	40.47	53.4
KRH30880	Soybean	cytosol	37.97	52.94
KRH32695	Soybean	cytosol	37.97	52.26
Solyc02g077450.2.1	Tomato	cytosol, mitochondrion, nucleus	38.12	52.25
PGSC0003DMT400081241	Potato	cytosol	38.12	52.25
GSMUA_Achr1P27380_001	Banana	cytosol	22.81	51.77
CDY35753	Canola	nucleus	36.72	51.31
Bra010864.1-P	Field mustard	nucleus	36.72	51.31
CDX90157	Canola	nucleus	36.41	50.98
Solyc10g008880.2.1	Tomato	cytosol, mitochondrion	37.81	50.73
CDY34095	Canola	nucleus	37.5	50.53
CDY30817	Canola	nucleus	37.97	50.31
AT1G28520.2	Thale cress	nucleus	38.12	50.21
VIT_12s0028g02670.t01	Wine grape	mitochondrion, nucleus	40.0	48.39
GSMUA_Achr4P15020_001	Banana	nucleus	45.0	46.38
AT2G42400.1	Thale cress	nucleus	31.72	45.11
Bra016879.1-P	Field mustard	nucleus	33.91	44.83
CDY64518	Canola	nucleus	32.19	43.92
CDY14829	Canola	nucleus	33.28	43.83
CDX79871	Canola	nucleus	32.34	43.76
Bra032913.1-P	Field mustard	mitochondrion, plastid	38.59	43.49
CDY47967	Canola	nucleus	32.81	43.39
KRH55846	Soybean	nucleus	31.72	42.47
Bra004691.1-P	Field mustard	nucleus	31.88	42.41
KRH25675	Soybean	nucleus	31.09	41.54
GSMUA_Achr6P22210_001	Banana	nucleus	33.75	40.22

Protein Annotations

EnsemblPlants:KXG33380	EnsemblPlantsGene:SORBI_3003G298100	GO:GO:0000003	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009791	GO:GO:0009987
GO:GO:0048578	ncoils:Coil	PANTHER:PTHR33873	PANTHER:PTHR33873:SF3	ProteinID:KXG33380	ProteinID:KXG33380.1
SEG:seg	SUPFAM:SSF101447	UniParc:UPI00081ACAEE	UniProt:A0A1B6Q642	MapMan:15.5.36	:

Description

hypothetical protein

Coordinates

chr3:-:62971045..62975445

Molecular Weight (calculated)

71179.3 Da

IEP (calculated)

5.224

GRAVY (calculated)

-0.689

Length

640 amino acids

Sequence
(BLAST)

001: MLGPGVARLL LPRPSLFPRP PTPTQQSGSQ SQKENSAEHL ACETEERTAR ERGERKTTTT PSIPLHFHPS SPPIAAATMG KGPSSRAGSR HHQFRARAMT
101: RVDDLQEVFS GLQSARKDSR PADAAVLEAQ LQQMLREWRS ELSAPSPASS LQGNARELSD PPSDTLRLLQ LAAAEEEDDA TSKMVEQQQQ QQQPPPPPPP
201: PPPPSADQNQ GHAQVRQDMK PEPREEAIDV AVEQPQPQLL SQGVLPNGAA TASAVFHDQM YYVNQELTVE DFLYDDDYKI DLSGSNLDVL NNLEGIVQLE
301: YPQFNFPQEL APNACLDMSN CGQSAGGVFL HMTDLLTTMT SAPSAFLKPK CALWDCPRPA IGSERWHDYC SMYHADLAVQ EEGPPGTMPV IRPRGIDLKD
401: GPLFAALSAK IQGKNVGIPI CEGAATAKSP WNAPELFDLY IFEGESIREW LFFDKPRRAF DSGNRKQRSL PDYSGRGWHE SRKQVMKDFG GLKRSYYMDP
501: QPSNSYEWHL YEYEINECDA FALYRLEFKS SDAKKIAKSK LACNPLNEIQ QQMVRLSADS PVDTKRMARS RTKANPVDVN TNIYSVPNTA VQANVPNAYQ
601: PGPQVDQMTY LNGNVVYGPH LPYGYSTEKS DFYWNSNDGT

Best Arabidopsis Sequence Match ( AT1G28520.5 )
(BLAST)

001: MTGKRSKTNC RSASHKLFKD KAKNRVDDLQ GMLLDLQFAR KESRPTDVTL LEEQVNQMLR EWKSELNEPS PASSLQQGGT LGSFSSDICR LLQLCDEEDD
101: ATSKLAAPKP EPADQNLEAG KAAVFQRGYN LVQGKSEHGL PLVDNCKDLS LAAGNNFDGT APLEYHQQYD LQQEFEPNFN GGFNNCPSYG VVEGPIHISN
201: FIPTICPPPS AFLGPKCALW DCPRPAQGFD WFQDYCSSFH AALAFNEGPP GMNPVVRPGG IGLKDGLLFA ALSAKAGGKD VGIPECEGAA TAKSPWNAPE
301: LFDLTVLESE TLREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQI MVEFGGLKRS YYMDPQPLHH FEWHLYEYEI NKCDACALYR LELKLVDGKK
401: TSKGKVSNDS VADLQKQMGR LTAEFPPENN TTNTTNNNKR CIKGRPKVST KVATGNVQNT VEQANDYGVG EEFNYLVGNL SDYYIP

Arabidopsis Description

VOZ1Transcription factor VOZ1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGQ0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.