Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS4A01G122500.2 | |
| TraesCS4B01G182400.1 | |
| TraesCS4D01G183400.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G42400.1 | TraesCS4A01G122500.2 | AT2G18790.1 | 22904146 |
| AT2G42400.1 | TraesCS4B01G182400.1 | AT2G18790.1 | 22904146 |
| AT2G42400.1 | TraesCS4D01G183400.1 | AT2G18790.1 | 22904146 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G326500.4 | Wheat | mitochondrion | 93.76 | 88.72 |
| TraesCS3A01G291900.1 | Wheat | nucleus | 94.68 | 80.75 |
| Os01t0753000-01 | Rice | cytosol | 74.68 | 76.22 |
| HORVU3Hr1G072260.1 | Barley | plastid | 88.81 | 73.67 |
| Zm00001d041158_P001 | Maize | cytosol | 41.65 | 73.46 |
| Zm00001d043500_P006 | Maize | mitochondrion | 73.21 | 72.68 |
| KXG33380 | Sorghum | mitochondrion | 72.66 | 61.88 |
| Zm00001d012734_P002 | Maize | cytosol | 71.93 | 60.03 |
| Zm00001d045641_P001 | Maize | cytosol | 40.37 | 56.85 |
| TraesCS1D01G338300.2 | Wheat | nucleus | 60.18 | 56.26 |
| PGSC0003DMT400058735 | Potato | cytosol | 32.29 | 53.17 |
| KRH50133 | Soybean | cytosol, nucleus, plastid | 45.5 | 51.99 |
| KRH20362 | Soybean | cytosol, nucleus, plastid | 44.95 | 51.26 |
| KRH30880 | Soybean | cytosol | 43.12 | 51.2 |
| Solyc02g077450.2.1 | Tomato | cytosol, mitochondrion, nucleus | 43.85 | 51.18 |
| VIT_10s0003g00500.t01 | Wine grape | nucleus | 45.5 | 51.13 |
| Bra010864.1-P | Field mustard | nucleus | 42.94 | 51.09 |
| CDX90157 | Canola | nucleus | 42.75 | 50.98 |
| KRH32695 | Soybean | cytosol | 43.49 | 50.97 |
| PGSC0003DMT400081241 | Potato | cytosol | 43.49 | 50.75 |
| CDY35753 | Canola | nucleus | 42.57 | 50.66 |
| Solyc10g008880.2.1 | Tomato | cytosol, mitochondrion | 43.12 | 49.27 |
| CDY34095 | Canola | nucleus | 42.75 | 49.05 |
| GSMUA_Achr1P27380_001 | Banana | cytosol | 25.32 | 48.94 |
| CDY30817 | Canola | nucleus | 43.12 | 48.65 |
| AT1G28520.2 | Thale cress | nucleus | 43.3 | 48.56 |
| VIT_12s0028g02670.t01 | Wine grape | mitochondrion, nucleus | 45.87 | 47.26 |
| AT2G42400.1 | Thale cress | nucleus | 37.25 | 45.11 |
| GSMUA_Achr4P15020_001 | Banana | nucleus | 50.64 | 44.44 |
| KRH55846 | Soybean | nucleus | 38.17 | 43.51 |
| KRH25675 | Soybean | nucleus | 37.8 | 43.01 |
| CDY64518 | Canola | nucleus | 35.78 | 41.58 |
| Bra016879.1-P | Field mustard | nucleus | 36.88 | 41.53 |
| CDY14829 | Canola | nucleus | 36.7 | 41.15 |
| Bra032913.1-P | Field mustard | mitochondrion, plastid | 42.75 | 41.02 |
| CDX79871 | Canola | nucleus | 35.6 | 41.01 |
| CDY47967 | Canola | nucleus | 36.15 | 40.7 |
| Bra004691.1-P | Field mustard | nucleus | 35.6 | 40.33 |
| GSMUA_Achr6P22210_001 | Banana | nucleus | 39.27 | 39.85 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G291600.1 | EnsemblPlantsGene:TraesCS3D01G291600 | PANTHER:PTHR33873 | PANTHER:PTHR33873:SF3 | SEG:seg | MapMan:15.5.36 |
Description
No Description!
Coordinates
chr3D:-:401675615..401680435
Molecular Weight (calculated)
61219.3 Da
IEP (calculated)
5.634
GRAVY (calculated)
-0.802
Length
545 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKGPSRSGS ARHQQFRARA KTRVDDLQDM FSGLQYARKE ARSTDAVLLE AQLHQMLREW RAELSVPSPA SSLQAGNNNR DPSDPPSETP RPPQLAPAEE
101: EDDATSKLVE QKPRPSANQT HKHPRGDQDM KPEPREEAIA HPVTVAQQPP SLGPGVITTP ASAGFHDQMY YVNQELSVED FLYDDDYKIN LPGSNPEILN
201: NLEGIGHQEY LQFNLPQELP PNAYLDMNNY GQNAGDGFLH MSDLLTTMSP APASFLRPKC ALWDCPRPAQ GSESWQDYCS MYHAELAVKE EGPPGTMPVI
301: RPRGIDLKDG PLFAALSAKI QGKHVGVPVC EGAATTKSPW NAPELFDLYI FEGESMREWL FFDKPRRAFD SGNRKQRSLP DYNGRGWHES RKQVMKDFGG
401: LKRSYYMDPQ PSSSYEWHLY EYEINDRDAF ALYRLEFKSS EAKKSAKSKF TCSPLIEIQQ QMVRLSADGH VENKRTARVR TQDVSTNIYP VQNNTAQASA
501: PDAYQAASQV DQMTFLNGSV VYGPHLPYGY STEGGDFYWN SNDGA
101: EDDATSKLVE QKPRPSANQT HKHPRGDQDM KPEPREEAIA HPVTVAQQPP SLGPGVITTP ASAGFHDQMY YVNQELSVED FLYDDDYKIN LPGSNPEILN
201: NLEGIGHQEY LQFNLPQELP PNAYLDMNNY GQNAGDGFLH MSDLLTTMSP APASFLRPKC ALWDCPRPAQ GSESWQDYCS MYHAELAVKE EGPPGTMPVI
301: RPRGIDLKDG PLFAALSAKI QGKHVGVPVC EGAATTKSPW NAPELFDLYI FEGESMREWL FFDKPRRAFD SGNRKQRSLP DYNGRGWHES RKQVMKDFGG
401: LKRSYYMDPQ PSSSYEWHLY EYEINDRDAF ALYRLEFKSS EAKKSAKSKF TCSPLIEIQQ QMVRLSADGH VENKRTARVR TQDVSTNIYP VQNNTAQASA
501: PDAYQAASQV DQMTFLNGSV VYGPHLPYGY STEGGDFYWN SNDGA
001: MTGKRSKTNC RSASHKLFKD KAKNRVDDLQ GMLLDLQFAR KESRPTDVTL LEEQVNQMLR EWKSELNEPS PASSLQQGGT LGSFSSDICR LLQLCDEEDD
101: ATSKLAAPKP EPADQNLEAG KAAVFQRGYN LVQGKSEHGL PLVDNCKDLS LAAGNNFDGT APLEYHQQYD LQQEFEPNFN GGFNNCPSYG VVEGPIHISN
201: FIPTICPPPS AFLGPKCALW DCPRPAQGFD WFQDYCSSFH AALAFNEGPP GMNPVVRPGG IGLKDGLLFA ALSAKAGGKD VGIPECEGAA TAKSPWNAPE
301: LFDLTVLESE TLREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQI MVEFGGLKRS YYMDPQPLHH FEWHLYEYEI NKCDACALYR LELKLVDGKK
401: TSKGKVSNDS VADLQKQMGR LTAEFPPENN TTNTTNNNKR CIKGRPKVST KVATGNVQNT VEQANDYGVG EEFNYLVGNL SDYYIP
101: ATSKLAAPKP EPADQNLEAG KAAVFQRGYN LVQGKSEHGL PLVDNCKDLS LAAGNNFDGT APLEYHQQYD LQQEFEPNFN GGFNNCPSYG VVEGPIHISN
201: FIPTICPPPS AFLGPKCALW DCPRPAQGFD WFQDYCSSFH AALAFNEGPP GMNPVVRPGG IGLKDGLLFA ALSAKAGGKD VGIPECEGAA TAKSPWNAPE
301: LFDLTVLESE TLREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQI MVEFGGLKRS YYMDPQPLHH FEWHLYEYEI NKCDACALYR LELKLVDGKK
401: TSKGKVSNDS VADLQKQMGR LTAEFPPENN TTNTTNNNKR CIKGRPKVST KVATGNVQNT VEQANDYGVG EEFNYLVGNL SDYYIP
Arabidopsis Description
VOZ1Transcription factor VOZ1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGQ0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.