Factsheet for TraesCS1D01G338300.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G122500.2
TraesCS4B01G182400.1
TraesCS4D01G183400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G42400.1	TraesCS4A01G122500.2	AT2G18790.1	22904146
AT2G42400.1	TraesCS4B01G182400.1	AT2G18790.1	22904146
AT2G42400.1	TraesCS4D01G183400.1	AT2G18790.1	22904146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G335900.1	Wheat	nucleus	81.99	87.87
TraesCS1B01G349200.1	Wheat	nucleus	87.82	87.37
HORVU3Hr1G023830.1	Barley	cytosol, plastid	8.92	82.54
HORVU5Hr1G058480.1	Barley	cytosol, mitochondrion, nucleus	10.12	71.95
Zm00001d022145_P001	Maize	cytosol	12.69	70.48
HORVU4Hr1G057240.1	Barley	cytosol, mitochondrion, nucleus, plastid	9.61	70.0
HORVU7Hr1G111470.1	Barley	nucleus	9.26	68.35
Os05t0515700-01	Rice	nucleus	71.53	65.05
EES18506	Sorghum	nucleus, plastid	66.04	63.22
Zm00001d038704_P002	Maize	plastid	64.32	62.09
TraesCS3D01G291600.1	Wheat	mitochondrion	56.26	60.18
HORVU2Hr1G042110.1	Barley	cytosol, mitochondrion, nucleus	11.15	59.63
HORVU6Hr1G038800.6	Barley	nucleus	10.29	58.82
KRH50133	Soybean	cytosol, nucleus, plastid	42.2	51.57
KRH20362	Soybean	cytosol, nucleus, plastid	42.2	51.46
KRH30880	Soybean	cytosol	40.48	51.42
KRH32695	Soybean	cytosol	40.99	51.4
PGSC0003DMT400058735	Potato	cytosol	29.16	51.36
PGSC0003DMT400081241	Potato	cytosol	40.48	50.54
VIT_10s0003g00500.t01	Wine grape	nucleus	41.85	50.31
CDX90157	Canola	nucleus	39.28	50.11
Bra010864.1-P	Field mustard	nucleus	39.28	50.0
Solyc02g077450.2.1	Tomato	cytosol, mitochondrion, nucleus	39.79	49.68
CDY35753	Canola	nucleus	38.94	49.56
GSMUA_Achr1P27380_001	Banana	cytosol	23.84	49.29
CDY34095	Canola	nucleus	39.97	49.05
AT1G28520.2	Thale cress	nucleus	40.65	48.77
Solyc10g008880.2.1	Tomato	cytosol, mitochondrion	39.79	48.64
CDY30817	Canola	nucleus	40.14	48.45
HORVU6Hr1G038750.11	Barley	nucleus	14.92	47.8
VIT_12s0028g02670.t01	Wine grape	mitochondrion, nucleus	43.05	47.45
HORVU4Hr1G057220.1	Barley	nucleus	14.41	46.15
GSMUA_Achr4P15020_001	Banana	nucleus	46.83	43.96
AT2G42400.1	Thale cress	nucleus	33.45	43.33
KRH55846	Soybean	nucleus	35.51	43.31
KRH25675	Soybean	nucleus	35.16	42.8
CDX79871	Canola	nucleus	33.45	41.23
CDY64518	Canola	nucleus	33.1	41.15
Bra032913.1-P	Field mustard	mitochondrion, plastid	39.97	41.02
Bra016879.1-P	Field mustard	nucleus	33.96	40.91
CDY47967	Canola	nucleus	33.62	40.5
Bra004691.1-P	Field mustard	nucleus	33.28	40.33
CDY14829	Canola	nucleus	33.45	40.12
HORVU2Hr1G109410.1	Barley	mitochondrion	12.18	39.44
GSMUA_Achr6P22210_001	Banana	nucleus	36.19	39.29

Protein Annotations

EnsemblPlants:TraesCS1D01G338300.2

EnsemblPlantsGene:TraesCS1D01G338300

PANTHER:PTHR33873

PANTHER:PTHR33873:SF3

SEG:seg

MapMan:15.5.36

Description

No Description!

Coordinates

chr1D:+:427614998..427618063

Molecular Weight (calculated)

63624.3 Da

IEP (calculated)

5.154

GRAVY (calculated)

-0.763

Length

583 amino acids

Sequence
(BLAST)

001: MAGDPTGGGG GSAAGKGPRS STRHQQFRDR AKTRVDDLQE IFSGLQSARK ESRSADAAVL EEQVHQMLRE WRAELSVASP ASSLQNSLGN NQGAADPPSE
101: TLRLLQLAID EEDDATSKLA QPMQPSRQDG HQNLNPGLQV HGGTVDGGAD ASQQSMGHGM QGEVADVANA LFSDQMYYID HELSIDDFLH GSNPDGLNNL
201: QGTGQPEHQQ FNLPLDLQHS NNSYADANNS VQSTGDVFFH MSDLLTTVGP SPSQYLGPKC ALWDCGRPVR GSEECQDYCN PYHAGLALSD DGLLGTRPVM
301: RPRGIDLKDG PLFDALCAKV QGKNVGIPVC EGAATSKSPW NAHELFDLSL LEGESLREWL FFDRPRRAFE SGNRKQRSLP DYNGRGWHES RKQVMKDFGG
401: LKKSYYMDPQ PSSNYEWHLF EYEINDSNTL ALYRLEFKAS DPKRSVKSKL GSSSLNEIQQ QMVKLSANSP VDNKRGARSK TKASQKDTNA NTYPALKTTN
501: QAGASNAYEA VPLNIPNQAS APNAYQTVAP SIPNQDSTSN AYEDASQVDP MSYLNENVVY GPHLPYGYPD GKGDFYWNPS GGA

Best Arabidopsis Sequence Match ( AT1G28520.1 )
(BLAST)

001: MTGKRSKTNC RSASHKLFKD KAKNRVDDLQ GMLLDLQFAR KESRPTDVTL LEEQVNQMLR EWKSELNEPS PASSLQQGGT LGSFSSDICR LLQLCDEEDD
101: ATSKLAAPKP EPADQNLEAG KAAVFQRGYN LVQGKSEHGL PLVDNCKDLS LAAGNNFDGT APLEYHQQYD LQQEFEPNFN GGFNNCPSYG VVEGPIHISN
201: FIPTICPPPS AFLGPKCALW DCPRPAQGFD WFQDYCSSFH AALAFNEGPP GMNPVVRPGG IGLKDGLLFA ALSAKAGGKD VGIPECEGAA TAKSPWNAPE
301: LFDLTVLESE TLREWLFFDK PRRAFESGNR KQRSLPDYNG RGWHESRKQI MVEFGGLKRS YYMDPQPLHH FEWHLYEYEI NKCDACALYR LELKLVDGKK
401: TSKGKVSNDS VADLQKQMGR LTAEFPPENN TTNTTNNNKR CIKGRPKVST KVATGNVQNT VEQANDYGVG EEFNYLVGNL SDYYIP

Arabidopsis Description

VOZ1Transcription factor VOZ1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SGQ0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.