Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G122500.2 | Wheat | plastid | 99.4 | 99.23 |
| TraesCS4B01G182400.1 | Wheat | plastid | 99.31 | 99.14 |
| HORVU4Hr1G053400.1 | Barley | plasma membrane | 98.11 | 97.77 |
| Os03t0309200-01 | Rice | nucleus, plasma membrane | 89.0 | 92.5 |
| Zm00001d028905_P001 | Maize | extracellular | 88.92 | 89.15 |
| EER94971 | Sorghum | plastid | 89.52 | 88.45 |
| Zm00001d047632_P001 | Maize | plastid | 88.14 | 87.99 |
| Zm00001d025231_P001 | Maize | cytosol | 11.17 | 81.25 |
| VIT_05s0077g00940.t01 | Wine grape | cytosol | 75.09 | 77.41 |
| PGSC0003DMT400061712 | Potato | cytosol, plastid | 73.28 | 75.49 |
| GSMUA_Achr3P08340_001 | Banana | nucleus | 69.85 | 74.66 |
| KRH36969 | Soybean | nucleus | 72.59 | 74.32 |
| Solyc01g059870.2.1 | Tomato | cytosol | 72.16 | 74.27 |
| Zm00001d000219_P001 | Maize | cytosol | 7.04 | 73.87 |
| KRH11936 | Soybean | nucleus | 72.77 | 73.72 |
| CDX92112 | Canola | cytosol | 70.79 | 72.66 |
| CDX95888 | Canola | cytosol | 70.7 | 70.46 |
| AT2G18790.1 | Thale cress | nucleus | 70.88 | 70.39 |
| Solyc05g053410.2.1 | Tomato | nucleus, plastid | 67.78 | 70.38 |
| PGSC0003DMT400069974 | Potato | mitochondrion | 67.96 | 70.31 |
| CDX75900 | Canola | cytosol | 69.42 | 69.96 |
| Bra022192.1-P | Field mustard | cytosol | 71.22 | 69.55 |
| AT4G16250.1 | Thale cress | plastid | 68.38 | 68.38 |
| Bra001650.1-P | Field mustard | cytosol | 8.25 | 62.75 |
| CDX82382 | Canola | cytosol | 9.36 | 59.24 |
| TraesCS5D01G401000.1 | Wheat | cytosol, plastid | 52.15 | 53.29 |
| TraesCS4D01G052200.1 | Wheat | plastid | 47.08 | 48.32 |
| Zm00001d024238_P001 | Maize | cytosol | 16.49 | 43.64 |
| CDY42549 | Canola | cytosol | 8.25 | 42.48 |
Protein Annotations
| Gene3D:1.10.287.130 | MapMan:26.1.1.1 | MapMan:26.4.1.2 | Gene3D:3.30.450.20 | Gene3D:3.30.450.270 | Gene3D:3.30.450.40 |
| Gene3D:3.30.565.10 | InterPro:GAF | InterPro:GAF-like_dom_sf | GO:GO:0000155 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004871 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009584 |
| GO:GO:0009585 | GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009881 | GO:GO:0009987 | GO:GO:0016301 |
| GO:GO:0016740 | GO:GO:0017006 | GO:GO:0018298 | GO:GO:0019538 | GO:GO:0038023 | GO:GO:0042803 |
| InterPro:HATPase_C | InterPro:HATPase_C_sf | InterPro:HisK_dim/P | InterPro:HisK_dim/P_sf | InterPro:His_kinase_dom | InterPro:IPR000014 |
| InterPro:IPR005467 | InterPro:IPR016132 | InterPro:IPR029016 | InterPro:IPR036890 | InterPro:PAS | InterPro:PAS-like_dom_sf |
| InterPro:PAS_2 | InterPro:PAS_fold | PFAM:PF00360 | PFAM:PF00512 | PFAM:PF00989 | PFAM:PF01590 |
| PFAM:PF02518 | PFAM:PF08446 | PIRSF:PIRSF000084 | PRINTS:PR01033 | ScanProsite:PS00245 | PFscan:PS50046 |
| PFscan:PS50109 | PFscan:PS50112 | PANTHER:PTHR43719 | PANTHER:PTHR43719:SF12 | InterPro:Phyto_chromo_BS | InterPro:Phyto_chromo_attachment |
| InterPro:Phytochrome | InterPro:Phytochrome_A-E | InterPro:Phytochrome_cen-reg | SMART:SM00065 | SMART:SM00091 | SMART:SM00387 |
| SMART:SM00388 | SUPFAM:SSF47384 | SUPFAM:SSF55781 | SUPFAM:SSF55785 | SUPFAM:SSF55874 | TIGRFAMs:TIGR00229 |
| EnsemblPlantsGene:TraesCS4D01G183400 | EnsemblPlants:TraesCS4D01G183400.1 | TIGR:cd00075 | TIGR:cd00082 | TIGR:cd00130 | SEG:seg |
Description
No Description!
Coordinates
chr4D:-:320593017..320600482
Molecular Weight (calculated)
127601.0 Da
IEP (calculated)
6.024
GRAVY (calculated)
-0.127
Length
1164 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASGSRATPT RSPSSARPAA PHQNHTQSSG GSTSRAGGGG AAGSAAATES VSKAVAQYTL DAGLHAVFEQ SGASGRSFDY SQSLLAPPTP SSEQQIAAYL
0101: SRIQRGGHIQ PFGCTLAVAD DSSFRLLAFS ENAADLLDLS PHHSVPSLDS SAAPPPVSLG ADARLLFSPS SGVLLERAFA AREISLLNPL WIHSRVSSKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISRLQALPG GDVKLLCDTV VEHVRELTGY DRVMVYKFHD DEHGEVLAES RRGDLEPYLG
0301: LHYPATDIPQ ASRFLFRQNR VRMIADCHAA AVRVIQDPAM PQPLCLVGST LRSPHGCHAQ YMANMGSIAS LVMAVIISSG GEDEHNMTRG VIPSAMKLWG
0401: LVVCHHTSPR CIPFPLRYAC EFLMQAFGLQ LNMELQLAHQ LSEKHILRTQ TLLCDMLLRD SPTGIVTQSP SIMDLVKCDG AALFYHGKYY PLGVTPTEAQ
0501: IKDIIEWLTV CHGDSTGLST DSLADAGYPG ATALGDAVCG MAVAYITPSD YLFWFRSHTA KEIKWGGAKH HPEDKDDGQR MHPRSSFKAF LEVVKSRSLP
0601: WENAEMDAIH SLQLILRDSF RDAGEGTSKS KAIVNGQVQL GELELRGIDE LSSVAREMVR LIETATVPIF AVDTYGCING WNAKVAELTG LTVEEAMGKS
0701: LVKDLIFKES EEIVEKLLSQ ALKGEEGTNV EIKLKTFGSE QSKGPIFVIV NACSSRDYTK SIVGVCFVGQ DITGQKVVMD KFVNIQGDYK AIVHNPNPLI
0801: PPIFASDENI CCSEWNTAME KLTGWSRGEV VGKLLVGEVF GNCCRLKGPD ALTKFMIVLH NAIGGQDSEK SPFSFFDKNG KYVQALLTAN TRSKMDGETI
0901: GAFCFLQIAS PELQQAFEIQ RQQEKKCYAR MKELAYICQE IKNPLSGIRF TNSLLEMTDL KDDQRQFLET SAACEKQMSK IVKDASLQSI EDGSLVLEKG
1001: EFSLGNVMNA VVSQVMILLR ERDLQLIRDI PDEIKEASAY GDQYRIQQVL SDFLLSMVRF APTENGWVEI QVRPNVKQNS DGTETMLFLF RFACPGEGLP
1101: PDIVQDMFSN ARWTTQEGIG LSVCRKILKL MGGEVQYIRE SERSFFLIVL ELPQPLRSES RERS
0101: SRIQRGGHIQ PFGCTLAVAD DSSFRLLAFS ENAADLLDLS PHHSVPSLDS SAAPPPVSLG ADARLLFSPS SGVLLERAFA AREISLLNPL WIHSRVSSKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISRLQALPG GDVKLLCDTV VEHVRELTGY DRVMVYKFHD DEHGEVLAES RRGDLEPYLG
0301: LHYPATDIPQ ASRFLFRQNR VRMIADCHAA AVRVIQDPAM PQPLCLVGST LRSPHGCHAQ YMANMGSIAS LVMAVIISSG GEDEHNMTRG VIPSAMKLWG
0401: LVVCHHTSPR CIPFPLRYAC EFLMQAFGLQ LNMELQLAHQ LSEKHILRTQ TLLCDMLLRD SPTGIVTQSP SIMDLVKCDG AALFYHGKYY PLGVTPTEAQ
0501: IKDIIEWLTV CHGDSTGLST DSLADAGYPG ATALGDAVCG MAVAYITPSD YLFWFRSHTA KEIKWGGAKH HPEDKDDGQR MHPRSSFKAF LEVVKSRSLP
0601: WENAEMDAIH SLQLILRDSF RDAGEGTSKS KAIVNGQVQL GELELRGIDE LSSVAREMVR LIETATVPIF AVDTYGCING WNAKVAELTG LTVEEAMGKS
0701: LVKDLIFKES EEIVEKLLSQ ALKGEEGTNV EIKLKTFGSE QSKGPIFVIV NACSSRDYTK SIVGVCFVGQ DITGQKVVMD KFVNIQGDYK AIVHNPNPLI
0801: PPIFASDENI CCSEWNTAME KLTGWSRGEV VGKLLVGEVF GNCCRLKGPD ALTKFMIVLH NAIGGQDSEK SPFSFFDKNG KYVQALLTAN TRSKMDGETI
0901: GAFCFLQIAS PELQQAFEIQ RQQEKKCYAR MKELAYICQE IKNPLSGIRF TNSLLEMTDL KDDQRQFLET SAACEKQMSK IVKDASLQSI EDGSLVLEKG
1001: EFSLGNVMNA VVSQVMILLR ERDLQLIRDI PDEIKEASAY GDQYRIQQVL SDFLLSMVRF APTENGWVEI QVRPNVKQNS DGTETMLFLF RFACPGEGLP
1101: PDIVQDMFSN ARWTTQEGIG LSVCRKILKL MGGEVQYIRE SERSFFLIVL ELPQPLRSES RERS
0001: MVSGVGGSGG GRGGGRGGEE EPSSSHTPNN RRGGEQAQSS GTKSLRPRSN TESMSKAIQQ YTVDARLHAV FEQSGESGKS FDYSQSLKTT TYGSSVPEQQ
0101: ITAYLSRIQR GGYIQPFGCM IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV AREITLLNPV WIHSKNTGKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG
0301: LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV
0401: VCHHTSSRCI PFPLRYACEF LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA FLYHGKYYPL GVAPSEVQIK
0501: DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE
0601: TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV
0701: SDLIYKENEA TVNKLLSRAL RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF INIQGDYKAI VHSPNPLIPP
0801: IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA
0901: FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF
1001: FLGSVINAIV SQAMFLLRDR GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF AAIRTEFRMA CPGEGLPPEL
1101: VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY
0101: ITAYLSRIQR GGYIQPFGCM IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV AREITLLNPV WIHSKNTGKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG
0301: LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV
0401: VCHHTSSRCI PFPLRYACEF LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA FLYHGKYYPL GVAPSEVQIK
0501: DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE
0601: TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV
0701: SDLIYKENEA TVNKLLSRAL RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF INIQGDYKAI VHSPNPLIPP
0801: IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA
0901: FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF
1001: FLGSVINAIV SQAMFLLRDR GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF AAIRTEFRMA CPGEGLPPEL
1101: VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY
Arabidopsis Description
PHYBPhytochrome [Source:UniProtKB/TrEMBL;Acc:A0A178W0V4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.