Factsheet for TraesCS3B01G238500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G308700.1
TraesCS1A01G308800.1
TraesCS1B01G319300.1
TraesCS1D01G308000.1
TraesCS2B01G113800.2
TraesCS3A01G184500.1
TraesCS3A01G191900.1
TraesCS3A01G335000.1
TraesCS3B01G219900.1
TraesCS3B01G365900.1
TraesCS3D01G188600.1
TraesCS3D01G194500.2
TraesCS3D01G328300.1
TraesCS4B01G131100.1
TraesCS4D01G126100.1
TraesCS5A01G057100.1
TraesCS5A01G057200.1
TraesCS5A01G139700.1
TraesCS5B01G059900.1
TraesCS5B01G137100.1
TraesCS5D01G068000.1
TraesCS5D01G068100.1
TraesCS5D01G153400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57010.1	TraesCS1A01G308700.1	AT5G21274.1	21798944
AT5G57010.1	TraesCS1A01G308800.1	AT5G21274.1	21798944
AT5G57010.1	TraesCS1B01G319300.1	AT5G21274.1	21798944
AT5G57010.1	TraesCS1D01G308000.1	AT5G21274.1	21798944
AT5G57010.1	TraesCS2B01G113800.2	AT5G21274.1	21798944
AT5G57010.1	TraesCS3A01G184500.1	AT5G21274.1	21798944
AT5G57010.1	TraesCS3A01G191900.1	AT5G21274.1	21798944
AT5G57010.1	TraesCS3A01G335000.1	AT5G21274.1	21798944
AT5G57010.1	TraesCS3B01G219900.1	AT5G21274.1	21798944
AT5G57010.1	TraesCS3B01G365900.1	AT5G21274.1	21798944
AT5G57010.1	TraesCS3D01G188600.1	AT5G21274.1	21798944
AT5G57010.1	TraesCS3D01G194500.2	AT5G21274.1	21798944
AT5G57010.1	TraesCS3D01G328300.1	AT5G21274.1	21798944
AT5G57010.1	TraesCS4B01G131100.1	AT5G21274.1	21798944
AT5G57010.1	TraesCS4D01G126100.1	AT5G21274.1	21798944
AT5G57010.1	TraesCS5A01G057100.1	AT5G21274.1	21798944
AT5G57010.1	TraesCS5A01G057200.1	AT5G21274.1	21798944
AT5G57010.1	TraesCS5A01G139700.1	AT5G21274.1	21798944
AT5G57010.1	TraesCS5B01G059900.1	AT5G21274.1	21798944
AT5G57010.1	TraesCS5B01G137100.1	AT5G21274.1	21798944
AT5G57010.1	TraesCS5D01G068000.1	AT5G21274.1	21798944
AT5G57010.1	TraesCS5D01G068100.1	AT5G21274.1	21798944
AT5G57010.1	TraesCS5D01G153400.1	AT5G21274.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G209200.2	Wheat	plastid	96.3	94.38
TraesCS3A01G206400.1	Wheat	plastid	95.75	93.17
HORVU3Hr1G049640.1	Barley	plastid	92.98	91.29
Os01t0570800-01	Rice	plastid	82.07	78.03
EES03151	Sorghum	mitochondrion, plastid	70.43	66.15
Zm00001d044253_P001	Maize	plastid	67.84	65.3
CDX75320	Canola	endoplasmic reticulum, extracellular	43.25	64.64
Bra017264.1-P	Field mustard	endoplasmic reticulum, extracellular	39.0	62.06
Zm00001d011228_P001	Maize	plastid	61.37	60.36
CDX68935	Canola	plastid	50.28	58.0
Bra011409.1-P	Field mustard	plastid	50.09	57.42
Solyc03g121770.1.1	Tomato	cytosol	28.28	57.3
VIT_09s0002g04560.t01	Wine grape	cytosol	33.27	56.96
CDX77035	Canola	plastid	49.17	55.53
GSMUA_Achr8P26270_001	Banana	plastid	48.98	55.21
GSMUA_Achr3P25890_001	Banana	mitochondrion	52.13	54.44
GSMUA_Achr8P05470_001	Banana	plastid	50.09	54.31
KRH19209	Soybean	cytosol	26.99	53.87
VIT_04s0008g01070.t01	Wine grape	cytosol, extracellular, nucleus	53.05	53.15
CDY45026	Canola	cytosol	50.46	53.01
CDY35312	Canola	plastid	50.83	52.58
Bra034295.1-P	Field mustard	plastid	50.65	52.29
AT2G26190.1	Thale cress	plastid	51.02	51.88
VIT_11s0016g01970.t01	Wine grape	cytosol	51.2	51.78
KRH12419	Soybean	cytosol, plastid	49.54	50.85
KRH02687	Soybean	plastid	49.72	50.75
AT5G57010.1	Thale cress	cytosol	46.21	50.51
KRH37419	Soybean	cytosol, extracellular, nucleus, plastid	49.17	50.38
Bra034546.1-P	Field mustard	cytosol	50.65	49.82
CDY28281	Canola	cytosol, plastid	50.46	49.01
AT4G33050.5	Thale cress	plastid	50.46	48.75
Bra002773.1-P	Field mustard	cytosol	45.1	48.13
KRH47098	Soybean	nucleus	43.99	47.7
KRH44122	Soybean	nucleus	43.81	47.4
KRH23287	Soybean	cytosol	42.14	44.88
TraesCS1B01G143800.1	Wheat	cytosol	46.95	43.79
Bra035643.1-P	Field mustard	cytosol	44.73	42.91
KRH10031	Soybean	cytosol	37.34	42.89
PGSC0003DMT400006372	Potato	endoplasmic reticulum, extracellular, golgi	24.21	42.81
TraesCS5B01G377900.1	Wheat	cytosol	41.96	42.19
TraesCS5B01G128200.1	Wheat	cytosol	35.86	40.42
TraesCS6B01G137500.1	Wheat	cytosol	35.86	40.17
TraesCS2B01G180000.1	Wheat	cytosol	41.22	38.99
TraesCS6B01G133900.1	Wheat	cytosol	33.64	38.16
TraesCS4B01G282600.2	Wheat	nucleus	40.48	32.74
TraesCS2B01G401000.1	Wheat	plastid	17.56	27.38
VIT_09s0002g01680.t01	Wine grape	plastid	49.35	26.49

Protein Annotations

EnsemblPlants:TraesCS3B01G238500.1	EnsemblPlantsGene:TraesCS3B01G238500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048
InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR31250	PANTHER:PTHR31250:SF1	PFscan:PS50096	SEG:seg	MapMan:35.1

Description

No Description!

Coordinates

chr3B:+:373842628..373844908

Molecular Weight (calculated)

60761.3 Da

IEP (calculated)

9.381

GRAVY (calculated)

-0.611

Length

541 amino acids

Sequence
(BLAST)

001: MSSLRPLNTE PSFLHSPMDA CAAPLRSPSP RVVAGPPKKR MPRPLQRSLS FKNWEAEAAA DEPEPATRCI NGARPGTLLL QSPGSKQQSP SKPHFVSPRP
101: QAELDDAATK VQKLFKGHRT RRNLADCAIV VEELWWKAYD SASLNIKSIS FFDEAKQETA ASRWSRAGKR IAKVGKGLSK DEKAQKLALQ HWLEAIDPRH
201: RYGHNLHLYY DIWSASSSTE PFFYWLDIGA GKDVHHQKCP RSKLYSQLIM YLGPNERAGY EVIVEQGKLM YRRSGLLVET TEDSKWIFVL STTRSLYIGQ
301: KKKGKFQHSS FLAGAATTAA GRLVAKDGIL KAIWPYSGHY LPTEENFREF ISFLEENNVD LANVKRCSVD DDEYPSFKKS SDEPTEMEGD DEKPTEEAQH
401: DETLNSSQIE LPEMDIIKEV VAEDNAETET KMASLPSFKW ATAAGARIGC VRDYPADLQS MALEHVNLSP RVVPSPSANR LPIPSPRPSP KIRLSPRLHY
501: MGLPTPTGRR LPIPSPEIRR QQFMGFHTPQ VSLTLPKHKA K

Best Arabidopsis Sequence Match ( AT4G33050.3 )
(BLAST)

001: MGLEVGSLCF KLKDGGLTSR TNSFKRDDTN RHQNSPKSTM ERSLSFNSWE VPKETKTDSD FEVLETKKST PNTLNGRNCE RIQIKKPTVT PPEPFVFFSP
101: RPVTELDAAA TTLQKVYKSY RTRRNLADCA VVVEELWWRT LEGAALDLSS VSFFGEEKHE TAVSKWARAR KRAAKVGKGL SKDEKAQKLA LQHWLEAIDP
201: RHRYGHNLHF YYDVWSASKS TQPFFYWLDI GDGKDVNLEK HPRSVLQKQC IRYLGPMERE AYEVIVEDGR LMYKQGMTLI NSTEEAKSIF VLSTTRNLYV
301: GIKKKGLFQH SSFLSGGATT AAGRLVARDG ILEAIWPYSG HYLPTEDNFK EFISFLEEHN VDLTNVKRCS VNEEYSSFKS TADEEEERKE VSEEVEIPSE
401: KEERARPVFD PVKRLSCKWT SGYGPRIGCV RDYPMELQAQ ALEQVSLSPR VSPANSYGPI PSPRPSPKVR VSPRLAYMGI PSPRAVKC

Arabidopsis Description

EDA39calmodulin-binding family protein [Source:TAIR;Acc:AT4G33050]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.