Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G128400.2 | Wheat | nucleus | 93.28 | 97.13 |
| TraesCS1A01G125400.1 | Wheat | nucleus | 86.55 | 97.1 |
| HORVU1Hr1G028900.11 | Barley | cytosol, mitochondrion, nucleus | 84.83 | 80.79 |
| Os05t0197300-01 | Rice | cytosol | 67.59 | 70.5 |
| KXG21506 | Sorghum | cytosol | 66.72 | 69.48 |
| Zm00001d037759_P002 | Maize | mitochondrion | 63.79 | 66.79 |
| GSMUA_Achr6P04920_001 | Banana | endoplasmic reticulum, vacuole | 50.69 | 56.87 |
| GSMUA_Achr7P09200_001 | Banana | cytosol, extracellular, nucleus, plastid | 47.24 | 53.73 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 43.79 | 49.13 |
| TraesCS3B01G238500.1 | Wheat | cytosol, plastid | 43.79 | 46.95 |
| TraesCS5B01G377900.1 | Wheat | cytosol | 38.97 | 42.01 |
| TraesCS2B01G180000.1 | Wheat | cytosol | 40.86 | 41.43 |
| TraesCS5B01G128200.1 | Wheat | cytosol | 33.1 | 40.0 |
| TraesCS6B01G137500.1 | Wheat | cytosol | 33.28 | 39.96 |
| TraesCS6B01G133900.1 | Wheat | cytosol | 31.72 | 38.57 |
| TraesCS4B01G282600.2 | Wheat | nucleus | 38.62 | 33.48 |
| CDX80650 | Canola | extracellular | 5.0 | 33.33 |
| TraesCS2B01G401000.1 | Wheat | plastid | 15.17 | 25.36 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G143800.1 | EnsemblPlantsGene:TraesCS1B01G143800 | PANTHER:PTHR31250 | PANTHER:PTHR31250:SF1 | SEG:seg | MapMan:35.1 |
Description
No Description!
Coordinates
chr1B:+:195555337..195560280
Molecular Weight (calculated)
65217.6 Da
IEP (calculated)
7.912
GRAVY (calculated)
-0.673
Length
580 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGMLAVSLA HVTSKEKIQF MGLYRRSWSE VLGTEISSPR THKFDMVNKI PAPWDEQKKN MTLKSQGQEH LFSKATLMHS VSFKQWRGGE ESTGSVQNKS
101: KQSLVNGIQD RRNSDALSPN VSSSPKCELD AAAVKLQKVY KSYRTRRNLA DCAVVVEELW WKALDFASLK HSSISFFNGG KPETAASRWA RARTRAAKVG
201: KGLSKNGKAQ KLALQHWLEA IDPRHRYGHN LHIYYDVWSR SESTEPFFYW LDIGEGKEIN LENFPRSKLQ GQCVKYLGPQ ERQHYEVVIE CGKLMFQETG
301: VLVHTSDDSK WIFVLSTTKA FYVGQKKKGS FQHSSFLAGG AITCAGRLVV KDGILKAIWP YSGHYLPTED NFRDFIRFLE ENHVSLTDVK KSAIDKPDEY
401: PLLSNSDNQP EHVENNEPAG AAAQDLTEVE IDGVLTGEAY HGSADHGDMS DAEEDAGTPV DSHTTDTEEE EEEEEVNNIS EQRPPASVDR SKNHQTCRWS
501: TGTGPRIRCV RDYQQDLQSR ALEHVNLSPR LAGSPSRKRD PVPSPRPSPG MILSPRLASV GFQPRTVSLT LPDFKRSRLQ
101: KQSLVNGIQD RRNSDALSPN VSSSPKCELD AAAVKLQKVY KSYRTRRNLA DCAVVVEELW WKALDFASLK HSSISFFNGG KPETAASRWA RARTRAAKVG
201: KGLSKNGKAQ KLALQHWLEA IDPRHRYGHN LHIYYDVWSR SESTEPFFYW LDIGEGKEIN LENFPRSKLQ GQCVKYLGPQ ERQHYEVVIE CGKLMFQETG
301: VLVHTSDDSK WIFVLSTTKA FYVGQKKKGS FQHSSFLAGG AITCAGRLVV KDGILKAIWP YSGHYLPTED NFRDFIRFLE ENHVSLTDVK KSAIDKPDEY
401: PLLSNSDNQP EHVENNEPAG AAAQDLTEVE IDGVLTGEAY HGSADHGDMS DAEEDAGTPV DSHTTDTEEE EEEEEVNNIS EQRPPASVDR SKNHQTCRWS
501: TGTGPRIRCV RDYQQDLQSR ALEHVNLSPR LAGSPSRKRD PVPSPRPSPG MILSPRLASV GFQPRTVSLT LPDFKRSRLQ
001: MGLSLSLLLS AWKEVVTTQF FSFKNPVESF LETRSFSLKL KEGGLTSRTN SFKSENPQEK SPKTGMERSL SFNSWEIVTE VETEPMNKED EEIVEPTKPA
101: RNSLNGRNCE RIQITKPTIT PPTPFVFFSP RPVTELDAAA TTLQKVYKSY RTRRNLADCA VVVEELWWKT LDAAALNLSS VAFFEEEKHE TAVSKWARAR
201: TRAAKVGKGL SKDEKAQKLA LQHWLEAIDP RHRYGHNLHF YYDVWSASMS AQPFFYWLDI GDGKDVNLEH HPRSVLQKQC IKYLGPLERE AYEVIVEDGK
301: LMNKQSMTLI NSTEDSKSIF VLSTTRTLYV GQKKKGRFQH SSFLSGGATT AAGRLVAREG ILEAIWPYSG HYLPTEDNFN EFISFLEENN VDMTNVKRCS
401: VNEEYSSFNS SGYEEEATKE EEAEKKPAET IVTEEQEEEK ERERPVFQLA KRLSCKWNSG VGPRIGCVRD YPMELQSQAF EQVSLSPRIS PGSTRFPSPY
501: GPIPSPRPSP RVRVSPRLAY MGIPSPRVQV NC
101: RNSLNGRNCE RIQITKPTIT PPTPFVFFSP RPVTELDAAA TTLQKVYKSY RTRRNLADCA VVVEELWWKT LDAAALNLSS VAFFEEEKHE TAVSKWARAR
201: TRAAKVGKGL SKDEKAQKLA LQHWLEAIDP RHRYGHNLHF YYDVWSASMS AQPFFYWLDI GDGKDVNLEH HPRSVLQKQC IKYLGPLERE AYEVIVEDGK
301: LMNKQSMTLI NSTEDSKSIF VLSTTRTLYV GQKKKGRFQH SSFLSGGATT AAGRLVAREG ILEAIWPYSG HYLPTEDNFN EFISFLEENN VDMTNVKRCS
401: VNEEYSSFNS SGYEEEATKE EEAEKKPAET IVTEEQEEEK ERERPVFQLA KRLSCKWNSG VGPRIGCVRD YPMELQSQAF EQVSLSPRIS PGSTRFPSPY
501: GPIPSPRPSP RVRVSPRLAY MGIPSPRVQV NC
Arabidopsis Description
IQM4IQ domain-containing protein IQM4 [Source:UniProtKB/Swiss-Prot;Acc:O64851]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.