Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G125400.1 | Wheat | nucleus | 90.84 | 97.87 |
| TraesCS1B01G143800.1 | Wheat | cytosol | 97.13 | 93.28 |
| HORVU1Hr1G028900.11 | Barley | cytosol, mitochondrion, nucleus | 87.97 | 80.46 |
| Os05t0197300-01 | Rice | cytosol | 70.92 | 71.04 |
| KXG21506 | Sorghum | cytosol | 69.84 | 69.84 |
| Zm00001d037759_P002 | Maize | mitochondrion | 66.61 | 66.97 |
| GSMUA_Achr6P04920_001 | Banana | endoplasmic reticulum, vacuole | 53.5 | 57.64 |
| GSMUA_Achr7P09200_001 | Banana | cytosol, extracellular, nucleus, plastid | 49.19 | 53.73 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 46.32 | 49.9 |
| TraesCS3D01G209200.2 | Wheat | plastid | 45.42 | 45.83 |
| TraesCS2D01G160200.1 | Wheat | cytosol | 42.55 | 41.51 |
| TraesCS6D01G097300.1 | Wheat | cytosol | 34.83 | 40.08 |
| TraesCS5D01G137100.1 | Wheat | cytosol | 34.47 | 40.0 |
| TraesCS6D01G093400.1 | Wheat | cytosol | 33.03 | 38.33 |
| TraesCS5D01G385200.2 | Wheat | cytosol | 36.98 | 36.98 |
| TraesCS4D01G281600.1 | Wheat | nucleus | 40.04 | 36.38 |
| CDX80650 | Canola | extracellular | 5.39 | 34.48 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G128400.2 | EnsemblPlantsGene:TraesCS1D01G128400 | PANTHER:PTHR31250 | PANTHER:PTHR31250:SF1 | SEG:seg | MapMan:35.1 |
Description
No Description!
Coordinates
chr1D:+:141546156..141548668
Molecular Weight (calculated)
62629.5 Da
IEP (calculated)
8.757
GRAVY (calculated)
-0.700
Length
557 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLYRRSWSE VLGTEISSPR THKFDMVNKI PAPWDEQKKN MTLKSQGQEH LFSKATLMHS VSFKQWRGGE ESTGSVQNKS KQSLVNGIQD RRNSDALSPN
101: VSSSPKCELD AAAVKLQKVY KSYRTRRNLA DCAVVVEELW WKALDFASLK HSSISFFNGG KPETAASRWA RARTRAAKVG KGLSKNGKAQ KLALQHWLEA
201: IDPRHRYGHN LHIYYDVWSR SESTEPFFYW LDIGEGKEIN LENCPRSKLQ GQCVKYLGPQ ERQHYEVVIE GGKLMFKQTG VLVHTSDDSK WIFVLSTTKA
301: FYVGHKKKGS FQHSSFLAGG AITCAGRLVV KDGILKAIWP YSGHYLPTED NFRDFIRFLQ ENDVSLTDVK KSAIDKQDEY PLLSNSETQP EHVENNDAAG
401: AAAQDLTEVE IDGVLTGEAY HGLADHGDMS DAEEDARTPV DSHTTDTEEE EEVNNISEQR PPASVDRSKN HQTCRWSTGT GSRIRCVRDY PQDLQSRALE
501: HVNLSPRLAG SPSRKRDPVP SPRPSPGMIL SPRLASVGFQ PRTVSLTLPD FKRSRLQ
101: VSSSPKCELD AAAVKLQKVY KSYRTRRNLA DCAVVVEELW WKALDFASLK HSSISFFNGG KPETAASRWA RARTRAAKVG KGLSKNGKAQ KLALQHWLEA
201: IDPRHRYGHN LHIYYDVWSR SESTEPFFYW LDIGEGKEIN LENCPRSKLQ GQCVKYLGPQ ERQHYEVVIE GGKLMFKQTG VLVHTSDDSK WIFVLSTTKA
301: FYVGHKKKGS FQHSSFLAGG AITCAGRLVV KDGILKAIWP YSGHYLPTED NFRDFIRFLQ ENDVSLTDVK KSAIDKQDEY PLLSNSETQP EHVENNDAAG
401: AAAQDLTEVE IDGVLTGEAY HGLADHGDMS DAEEDARTPV DSHTTDTEEE EEVNNISEQR PPASVDRSKN HQTCRWSTGT GSRIRCVRDY PQDLQSRALE
501: HVNLSPRLAG SPSRKRDPVP SPRPSPGMIL SPRLASVGFQ PRTVSLTLPD FKRSRLQ
001: MGLSLSLLLS AWKEVVTTQF FSFKNPVESF LETRSFSLKL KEGGLTSRTN SFKSENPQEK SPKTGMERSL SFNSWEIVTE VETEPMNKED EEIVEPTKPA
101: RNSLNGRNCE RIQITKPTIT PPTPFVFFSP RPVTELDAAA TTLQKVYKSY RTRRNLADCA VVVEELWWKT LDAAALNLSS VAFFEEEKHE TAVSKWARAR
201: TRAAKVGKGL SKDEKAQKLA LQHWLEAIDP RHRYGHNLHF YYDVWSASMS AQPFFYWLDI GDGKDVNLEH HPRSVLQKQC IKYLGPLERE AYEVIVEDGK
301: LMNKQSMTLI NSTEDSKSIF VLSTTRTLYV GQKKKGRFQH SSFLSGGATT AAGRLVAREG ILEAIWPYSG HYLPTEDNFN EFISFLEENN VDMTNVKRCS
401: VNEEYSSFNS SGYEEEATKE EEAEKKPAET IVTEEQEEEK ERERPVFQLA KRLSCKWNSG VGPRIGCVRD YPMELQSQAF EQVSLSPRIS PGSTRFPSPY
501: GPIPSPRPSP RVRVSPRLAY MGIPSPRVQV NC
101: RNSLNGRNCE RIQITKPTIT PPTPFVFFSP RPVTELDAAA TTLQKVYKSY RTRRNLADCA VVVEELWWKT LDAAALNLSS VAFFEEEKHE TAVSKWARAR
201: TRAAKVGKGL SKDEKAQKLA LQHWLEAIDP RHRYGHNLHF YYDVWSASMS AQPFFYWLDI GDGKDVNLEH HPRSVLQKQC IKYLGPLERE AYEVIVEDGK
301: LMNKQSMTLI NSTEDSKSIF VLSTTRTLYV GQKKKGRFQH SSFLSGGATT AAGRLVAREG ILEAIWPYSG HYLPTEDNFN EFISFLEENN VDMTNVKRCS
401: VNEEYSSFNS SGYEEEATKE EEAEKKPAET IVTEEQEEEK ERERPVFQLA KRLSCKWNSG VGPRIGCVRD YPMELQSQAF EQVSLSPRIS PGSTRFPSPY
501: GPIPSPRPSP RVRVSPRLAY MGIPSPRVQV NC
Arabidopsis Description
IQM4IQ domain-containing protein IQM4 [Source:UniProtKB/Swiss-Prot;Acc:O64851]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.