Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G377900.1 | Wheat | cytosol | 88.15 | 91.26 |
| TraesCS5A01G375700.1 | Wheat | cytosol | 85.28 | 88.95 |
| HORVU5Hr1G093140.18 | Barley | cytosol, nucleus | 81.15 | 79.16 |
| HORVU2Hr1G015200.2 | Barley | cytosol | 56.37 | 78.5 |
| HORVU1Hr1G045060.3 | Barley | nucleus | 49.01 | 73.98 |
| EER92212 | Sorghum | cytosol | 70.92 | 68.82 |
| Zm00001d047402_P001 | Maize | cytosol | 65.89 | 68.22 |
| Os03t0374500-00 | Rice | nucleus | 69.48 | 67.07 |
| HORVU5Hr1G120690.3 | Barley | nucleus | 35.19 | 64.69 |
| TraesCS2D01G160200.1 | Wheat | cytosol | 58.71 | 57.27 |
| CDY45027 | Canola | extracellular | 1.08 | 50.0 |
| Bra021491.1-P | Field mustard | nucleus | 43.45 | 49.09 |
| VIT_08s0007g07190.t01 | Wine grape | cytosol | 45.6 | 47.65 |
| Bra027414.1-P | Field mustard | nucleus | 47.58 | 46.01 |
| TraesCS4D01G281600.1 | Wheat | nucleus | 49.01 | 44.54 |
| CDY06038 | Canola | mitochondrion, nucleus | 5.75 | 44.44 |
| AT3G13600.1 | Thale cress | nucleus | 48.11 | 44.3 |
| Solyc01g044420.2.1 | Tomato | nucleus | 45.6 | 44.1 |
| Bra001512.1-P | Field mustard | cytosol | 41.83 | 44.05 |
| PGSC0003DMT400080788 | Potato | nucleus | 42.37 | 43.3 |
| KRH58931 | Soybean | nucleus | 50.99 | 43.29 |
| KRH71773 | Soybean | nucleus | 42.73 | 42.5 |
| KRG97321 | Soybean | nucleus | 42.55 | 42.4 |
| KRH42833 | Soybean | cytosol | 49.91 | 42.06 |
| TraesCS5D01G137100.1 | Wheat | cytosol | 36.09 | 41.88 |
| Bra014570.1-P | Field mustard | nucleus | 42.01 | 41.56 |
| GSMUA_Achr6P01510_001 | Banana | nucleus | 15.44 | 41.55 |
| AT3G58480.1 | Thale cress | nucleus | 42.19 | 40.87 |
| TraesCS6D01G097300.1 | Wheat | cytosol | 35.19 | 40.5 |
| VIT_06s0004g00690.t01 | Wine grape | nucleus | 48.65 | 40.45 |
| KRH38004 | Soybean | cytosol | 43.09 | 40.34 |
| Solyc01g005800.2.1 | Tomato | nucleus | 46.86 | 39.49 |
| Solyc10g078650.1.1 | Tomato | nucleus | 42.01 | 38.55 |
| TraesCS6D01G093400.1 | Wheat | cytosol | 33.21 | 38.54 |
| Solyc10g080640.1.1 | Tomato | nucleus | 43.45 | 38.23 |
| PGSC0003DMT400021529 | Potato | cytosol | 43.27 | 37.66 |
| TraesCS1D01G128400.2 | Wheat | nucleus | 36.98 | 36.98 |
| TraesCS3D01G209200.2 | Wheat | plastid | 36.62 | 36.96 |
| PGSC0003DMT400060938 | Potato | nucleus, plastid | 39.68 | 31.53 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G385200.2 | EnsemblPlantsGene:TraesCS5D01G385200 | PANTHER:PTHR31250 | PANTHER:PTHR31250:SF16 | SEG:seg | MapMan:35.1 |
Description
No Description!
Coordinates
chr5D:+:454309605..454311925
Molecular Weight (calculated)
62939.5 Da
IEP (calculated)
6.942
GRAVY (calculated)
-0.557
Length
557 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVMFSCPAD DYDPMEEGAL APADGGEPTV LRALGSGKLL IQGSLSFKRE QQRDDSPGSL QLETEISIRT AGDIAGAEAE AEAPPPLVPR EVARLRAGAE
101: SPRHDAAALR LQKVYKSFRT RRQLADCAVL VEQSWWKLLD FALLNRSSVS FFDIEKQETA VSKWSRARSR AAKVGKGLSK DDKAQKLALQ HWLEAIDPRH
201: RYGHNLHYYY DCWLHSESKQ PFFYWLDVGE GKEINLEGKC SRFKLLSQCI KYLGPKERED YEVVIEDSKF LYKKNRQIID TSFGPRDAKW IFVLSTTKTL
301: RRKVNFSILA FLPGELLLLL GGWLLKMEPS RYASNSYLLL HPVLSSGNML TPSELHCWQA IWPHSGHYRP TEENFQEFKS FLNDNLVDLS DVKMSPAEED
401: EEFWGSLKRI ASENDKSEDG PEETGSLQTA QVIQTTSTET EEREEPVVAR EKILQRINSK KDMKSYQLGK QLSFKWTTGA GPRIGCVRDY PSELQAHALE
501: QMNLSPRCDA GSASTRFASP LRRSFNSIVA RGCENETSTP RGALRSPLQH GLVADER
101: SPRHDAAALR LQKVYKSFRT RRQLADCAVL VEQSWWKLLD FALLNRSSVS FFDIEKQETA VSKWSRARSR AAKVGKGLSK DDKAQKLALQ HWLEAIDPRH
201: RYGHNLHYYY DCWLHSESKQ PFFYWLDVGE GKEINLEGKC SRFKLLSQCI KYLGPKERED YEVVIEDSKF LYKKNRQIID TSFGPRDAKW IFVLSTTKTL
301: RRKVNFSILA FLPGELLLLL GGWLLKMEPS RYASNSYLLL HPVLSSGNML TPSELHCWQA IWPHSGHYRP TEENFQEFKS FLNDNLVDLS DVKMSPAEED
401: EEFWGSLKRI ASENDKSEDG PEETGSLQTA QVIQTTSTET EEREEPVVAR EKILQRINSK KDMKSYQLGK QLSFKWTTGA GPRIGCVRDY PSELQAHALE
501: QMNLSPRCDA GSASTRFASP LRRSFNSIVA RGCENETSTP RGALRSPLQH GLVADER
001: MGLSLSLLLS AWKEVVTTQF FSFKNPVESF LETRSFSLKL KEGGLTSRTN SFKSENPQEK SPKTGMERSL SFNSWEIVTE VETEPMNKED EEIVEPTKPA
101: RNSLNGRNCE RIQITKPTIT PPTPFVFFSP RPVTELDAAA TTLQKVYKSY RTRRNLADCA VVVEELWWKT LDAAALNLSS VAFFEEEKHE TAVSKWARAR
201: TRAAKVGKGL SKDEKAQKLA LQHWLEAIDP RHRYGHNLHF YYDVWSASMS AQPFFYWLDI GDGKDVNLEH HPRSVLQKQC IKYLGPLERE AYEVIVEDGK
301: LMNKQSMTLI NSTEDSKSIF VLSTTRTLYV GQKKKGRFQH SSFLSGGATT AAGRLVAREG ILEAIWPYSG HYLPTEDNFN EFISFLEENN VDMTNVKRCS
401: VNEEYSSFNS SGYEEEATKE EEAEKKPAET IVTEEQEEEK ERERPVFQLA KRLSCKWNSG VGPRIGCVRD YPMELQSQAF EQVSLSPRIS PGSTRFPSPY
501: GPIPSPRPSP RVRVSPRLAY MGIPSPRVQV NC
101: RNSLNGRNCE RIQITKPTIT PPTPFVFFSP RPVTELDAAA TTLQKVYKSY RTRRNLADCA VVVEELWWKT LDAAALNLSS VAFFEEEKHE TAVSKWARAR
201: TRAAKVGKGL SKDEKAQKLA LQHWLEAIDP RHRYGHNLHF YYDVWSASMS AQPFFYWLDI GDGKDVNLEH HPRSVLQKQC IKYLGPLERE AYEVIVEDGK
301: LMNKQSMTLI NSTEDSKSIF VLSTTRTLYV GQKKKGRFQH SSFLSGGATT AAGRLVAREG ILEAIWPYSG HYLPTEDNFN EFISFLEENN VDMTNVKRCS
401: VNEEYSSFNS SGYEEEATKE EEAEKKPAET IVTEEQEEEK ERERPVFQLA KRLSCKWNSG VGPRIGCVRD YPMELQSQAF EQVSLSPRIS PGSTRFPSPY
501: GPIPSPRPSP RVRVSPRLAY MGIPSPRVQV NC
Arabidopsis Description
IQM4IQ domain-containing protein IQM4 [Source:UniProtKB/Swiss-Prot;Acc:O64851]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.