Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G375700.1 | Wheat | cytosol | 94.98 | 95.69 |
| TraesCS5D01G385200.2 | Wheat | cytosol | 91.26 | 88.15 |
| EER92212 | Sorghum | cytosol | 79.74 | 74.74 |
| Zm00001d047402_P001 | Maize | cytosol | 73.23 | 73.23 |
| Os03t0374500-00 | Rice | nucleus | 76.95 | 71.75 |
| TraesCS2B01G180000.1 | Wheat | cytosol | 66.17 | 62.24 |
| Bra021491.1-P | Field mustard | nucleus | 49.44 | 53.96 |
| VIT_08s0007g07190.t01 | Wine grape | cytosol | 51.12 | 51.59 |
| Bra027414.1-P | Field mustard | nucleus | 53.9 | 50.35 |
| CDY45027 | Canola | extracellular | 1.12 | 50.0 |
| Bra001512.1-P | Field mustard | cytosol | 48.14 | 48.96 |
| AT3G13600.1 | Thale cress | nucleus | 54.65 | 48.59 |
| CDY06038 | Canola | mitochondrion, nucleus | 6.32 | 47.22 |
| Solyc01g044420.2.1 | Tomato | nucleus | 50.56 | 47.22 |
| PGSC0003DMT400080788 | Potato | nucleus | 47.4 | 46.79 |
| KRH71773 | Soybean | nucleus | 48.51 | 46.61 |
| TraesCS5B01G128200.1 | Wheat | cytosol | 41.26 | 46.25 |
| KRH58931 | Soybean | nucleus | 56.32 | 46.19 |
| KRG97321 | Soybean | nucleus | 47.77 | 45.98 |
| Bra014570.1-P | Field mustard | nucleus | 47.77 | 45.65 |
| KRH42833 | Soybean | cytosol | 55.39 | 45.08 |
| TraesCS6B01G137500.1 | Wheat | cytosol | 40.15 | 44.72 |
| AT3G58480.1 | Thale cress | nucleus | 47.77 | 44.7 |
| KRH38004 | Soybean | cytosol | 49.07 | 44.37 |
| VIT_06s0004g00690.t01 | Wine grape | nucleus | 55.02 | 44.18 |
| GSMUA_Achr6P01510_001 | Banana | nucleus | 16.73 | 43.48 |
| TraesCS4B01G282600.2 | Wheat | nucleus | 53.9 | 43.35 |
| Solyc01g005800.2.1 | Tomato | nucleus | 52.6 | 42.81 |
| TraesCS6B01G133900.1 | Wheat | cytosol | 37.92 | 42.77 |
| Solyc10g078650.1.1 | Tomato | nucleus | 47.4 | 42.01 |
| TraesCS3B01G238500.1 | Wheat | cytosol, plastid | 42.19 | 41.96 |
| Solyc10g080640.1.1 | Tomato | nucleus | 49.07 | 41.71 |
| PGSC0003DMT400021529 | Potato | cytosol | 48.7 | 40.94 |
| TraesCS1B01G143800.1 | Wheat | cytosol | 42.01 | 38.97 |
| TraesCS2B01G401000.1 | Wheat | plastid | 22.49 | 34.87 |
| PGSC0003DMT400060938 | Potato | nucleus, plastid | 44.98 | 34.52 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G377900.1 | EnsemblPlantsGene:TraesCS5B01G377900 | PANTHER:PTHR31250 | PANTHER:PTHR31250:SF16 | SEG:seg | MapMan:35.1 |
Description
No Description!
Coordinates
chr5B:+:555951148..555953440
Molecular Weight (calculated)
60190.0 Da
IEP (calculated)
7.754
GRAVY (calculated)
-0.609
Length
538 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVMFSCPAD DYDPMEEGAL APADGGEPTV LRALGSGKLL IQGSLSFKRE QQLDDSPGSL QLETEISIRT AGDIAGAEDE AEAPPPLAPR ELARLRAGAE
101: SPRHDAAALR LQKVYKSFRT RRQLADCAVL VEQSWWKLLD FALLNRSSVS FFDIEKQETA VSKWSRARSR AAKVGKGLSK DDKAQKLALQ HWLEAIDPRH
201: RYGHNLHYYY DCWLHSESKQ PFFYWLDVGE GKEINLEGKC SRSKLLSQCI KYLGPKERED YEVVIEDSKF LYKKSRQIID TSFGPRDAKW IFVLSTAKTL
301: YVGQKKKGKF QHSSFLAGGA TSAAGRLVAE NGTLKAIWPH SGHYRPTEEN FQEFKSFLND NLVDLTDVKM SPAEEDEEFW GSLKRIASEN DKSEDGPAAP
401: EETGSLQTAQ VVQTTSTETE KREEPVVARE KILQRINSKK DMKSYQLGKQ LSFKWTTGAG PRIGCVRDYP SELQAHALEQ MNLSPRCAAG PACTRFASPL
501: RRSFNSIVTV TRGCENETST PRGAFRSPLQ HGLVADER
101: SPRHDAAALR LQKVYKSFRT RRQLADCAVL VEQSWWKLLD FALLNRSSVS FFDIEKQETA VSKWSRARSR AAKVGKGLSK DDKAQKLALQ HWLEAIDPRH
201: RYGHNLHYYY DCWLHSESKQ PFFYWLDVGE GKEINLEGKC SRSKLLSQCI KYLGPKERED YEVVIEDSKF LYKKSRQIID TSFGPRDAKW IFVLSTAKTL
301: YVGQKKKGKF QHSSFLAGGA TSAAGRLVAE NGTLKAIWPH SGHYRPTEEN FQEFKSFLND NLVDLTDVKM SPAEEDEEFW GSLKRIASEN DKSEDGPAAP
401: EETGSLQTAQ VVQTTSTETE KREEPVVARE KILQRINSKK DMKSYQLGKQ LSFKWTTGAG PRIGCVRDYP SELQAHALEQ MNLSPRCAAG PACTRFASPL
501: RRSFNSIVTV TRGCENETST PRGAFRSPLQ HGLVADER
001: METKTILRSI SFNDIDSDST ITESPEARKT LYNRSLSGKG TQRSRISPGD VENNFSIKPL TFMKEDDRYK MRIWKPVCEN EHAKEFLALL LGDGTYQAAL
101: KLQKVYRSFR TRRRLADCAV VVEQRWWKVL DFAELKRSSI SFFEIEKQET AVSRWSRART RAAKVGKGLS KDEKARKLAL QHWLEAIDPR HRYGHNLQFY
201: YHAWLHCDSK QPFFYWLDIG QGKELNHERC PRSKLYQQSI KYLGPTEREA YEVIIEDGKL MYKQSGIVLD TKEGPPDAKW IFVLSVSKIL YVGMKKKGNF
301: QHSSFLAGGA TLSAGRIVVD DGVLKAVWPH SGHYLPTEEN FQAFMSFLRE NNVDLANVKK NPDEEDGEAP AKVKRMPSRI KETEEEHCDF VDAETGFSPN
401: TKPNNHAELQ TLSRFHSKLS RLDEIPDEDD NMIEEEQDDE EEPETPSEQG YETAEETFIA EEEFTYPKSN LFDEDIEDYE KPVLKEKIMR RIDSHKGIKS
501: YQLAERLHSR WSTGAGPRIS CMRDYPSELQ FRVLEQAHLS PRASSNSSKI SPFAPVRTRG TSLGRSPLAE ELENL
101: KLQKVYRSFR TRRRLADCAV VVEQRWWKVL DFAELKRSSI SFFEIEKQET AVSRWSRART RAAKVGKGLS KDEKARKLAL QHWLEAIDPR HRYGHNLQFY
201: YHAWLHCDSK QPFFYWLDIG QGKELNHERC PRSKLYQQSI KYLGPTEREA YEVIIEDGKL MYKQSGIVLD TKEGPPDAKW IFVLSVSKIL YVGMKKKGNF
301: QHSSFLAGGA TLSAGRIVVD DGVLKAVWPH SGHYLPTEEN FQAFMSFLRE NNVDLANVKK NPDEEDGEAP AKVKRMPSRI KETEEEHCDF VDAETGFSPN
401: TKPNNHAELQ TLSRFHSKLS RLDEIPDEDD NMIEEEQDDE EEPETPSEQG YETAEETFIA EEEFTYPKSN LFDEDIEDYE KPVLKEKIMR RIDSHKGIKS
501: YQLAERLHSR WSTGAGPRIS CMRDYPSELQ FRVLEQAHLS PRASSNSSKI SPFAPVRTRG TSLGRSPLAE ELENL
Arabidopsis Description
IQM6IQ domain-containing protein IQM6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2G8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.