Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G281600.1 | Wheat | nucleus | 87.0 | 94.94 |
| TraesCS4A01G021000.1 | Wheat | nucleus | 84.75 | 92.95 |
| HORVU4Hr1G074550.4 | Barley | cytosol | 84.6 | 92.48 |
| HORVU4Hr1G074540.1 | Barley | cytosol | 29.0 | 77.29 |
| Os03t0167200-01 | Rice | plasma membrane | 66.67 | 73.11 |
| KXG40105 | Sorghum | cytosol | 66.37 | 69.7 |
| Zm00001d027815_P002 | Maize | nucleus | 65.62 | 68.38 |
| TraesCS5B01G377900.1 | Wheat | cytosol | 43.35 | 53.9 |
| VIT_08s0007g07190.t01 | Wine grape | cytosol | 41.11 | 51.59 |
| TraesCS2B01G180000.1 | Wheat | cytosol | 43.65 | 51.05 |
| Bra021491.1-P | Field mustard | nucleus | 37.52 | 50.91 |
| Bra027414.1-P | Field mustard | nucleus | 40.06 | 46.53 |
| KRH71773 | Soybean | nucleus | 38.56 | 46.07 |
| Bra014570.1-P | Field mustard | nucleus | 38.12 | 45.29 |
| AT3G58480.1 | Thale cress | nucleus | 38.42 | 44.7 |
| Solyc01g044420.2.1 | Tomato | nucleus | 38.42 | 44.62 |
| KRH38004 | Soybean | cytosol | 39.61 | 44.54 |
| Bra001512.1-P | Field mustard | cytosol | 35.13 | 44.42 |
| TraesCS5B01G128200.1 | Wheat | cytosol | 31.84 | 44.38 |
| KRG97321 | Soybean | nucleus | 36.92 | 44.19 |
| PGSC0003DMT400080788 | Potato | nucleus | 35.87 | 44.04 |
| AT3G13600.1 | Thale cress | nucleus | 39.76 | 43.97 |
| TraesCS6B01G137500.1 | Wheat | cytosol | 31.69 | 43.89 |
| KRH58931 | Soybean | nucleus | 41.55 | 42.38 |
| KRH42833 | Soybean | cytosol | 41.7 | 42.21 |
| Solyc10g080640.1.1 | Tomato | nucleus | 39.91 | 42.18 |
| VIT_06s0004g00690.t01 | Wine grape | nucleus | 42.0 | 41.94 |
| TraesCS6B01G133900.1 | Wheat | cytosol | 29.75 | 41.72 |
| Solyc01g005800.2.1 | Tomato | nucleus | 40.36 | 40.85 |
| Solyc10g078650.1.1 | Tomato | nucleus | 36.92 | 40.69 |
| TraesCS3B01G238500.1 | Wheat | cytosol, plastid | 32.74 | 40.48 |
| PGSC0003DMT400021529 | Potato | cytosol | 38.27 | 40.0 |
| TraesCS1B01G143800.1 | Wheat | cytosol | 33.48 | 38.62 |
| PGSC0003DMT400060938 | Potato | nucleus, plastid | 37.07 | 35.38 |
| TraesCS2B01G401000.1 | Wheat | plastid | 15.7 | 30.26 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G282600.2 | EnsemblPlantsGene:TraesCS4B01G282600 | PANTHER:PTHR31250 | PANTHER:PTHR31250:SF5 | SEG:seg | MapMan:35.1 |
Description
No Description!
Coordinates
chr4B:-:565861633..565864388
Molecular Weight (calculated)
74783.2 Da
IEP (calculated)
9.781
GRAVY (calculated)
-0.633
Length
669 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQRSKTTEA SHTEETIDLR QTMGLSISYP PDDYLPADDD NSDRLFVRSL SLHNLGSLET PDSPPEISDA VSSTKPARKG SLNARRKEGP PLHVDTTKPR
101: ASPKPDTECC THKHNHSLPK YGANYLPPNS PVVGMVSPQH QAAAVRVQKV YKSFRTRRQL ADCAVLVEQR WYVTISCACR PLLYLIQWLF VTGVTMPEIC
201: DAEFRWKLLD FALLKQSSVS FFEEEKPETA LSRWSRARIK AAKVGKGLSK DEKAQKLALQ HWLEAIDPRH RYGHNLHYYY KSWLHCDSQQ PFFYWLDVGE
301: GKEINLEDHC PRWKLLQQCI RYLGPKEREF YEVKIENKIM MYKLSCKIVD TSEGPKDAKW IFVLSTTKIL YIGTKSKGTF QHSSFLAGGA TSAAGRLVVA
401: NGILKAVWPH SGHYRPTEAN FREFMKYLRK RNVDLTDVKL SPTEGEEDEW LRSCLSQMDL TTEISTPKKQ GDTRAQLPRG DKKKIKPAVP AAPPSTSGEA
501: GAGSPGMKRS SSGTRLQRKR PPRLTVNKNR LDKGAAEQDA GTFGDRLDFC KANLFTGRSA EGGEGGEEPA VPQERIMHRI NSKMAHNSYQ LGQQLSLRWT
601: TGAGPRIGCV RDYPPELQFR SLEQVSLSPR AGAGPPRLGA TPRQRSPCTP SPLGAPGTPA APLLQHGAA
101: ASPKPDTECC THKHNHSLPK YGANYLPPNS PVVGMVSPQH QAAAVRVQKV YKSFRTRRQL ADCAVLVEQR WYVTISCACR PLLYLIQWLF VTGVTMPEIC
201: DAEFRWKLLD FALLKQSSVS FFEEEKPETA LSRWSRARIK AAKVGKGLSK DEKAQKLALQ HWLEAIDPRH RYGHNLHYYY KSWLHCDSQQ PFFYWLDVGE
301: GKEINLEDHC PRWKLLQQCI RYLGPKEREF YEVKIENKIM MYKLSCKIVD TSEGPKDAKW IFVLSTTKIL YIGTKSKGTF QHSSFLAGGA TSAAGRLVVA
401: NGILKAVWPH SGHYRPTEAN FREFMKYLRK RNVDLTDVKL SPTEGEEDEW LRSCLSQMDL TTEISTPKKQ GDTRAQLPRG DKKKIKPAVP AAPPSTSGEA
501: GAGSPGMKRS SSGTRLQRKR PPRLTVNKNR LDKGAAEQDA GTFGDRLDFC KANLFTGRSA EGGEGGEEPA VPQERIMHRI NSKMAHNSYQ LGQQLSLRWT
601: TGAGPRIGCV RDYPPELQFR SLEQVSLSPR AGAGPPRLGA TPRQRSPCTP SPLGAPGTPA APLLQHGAA
001: MGLSLSLLLS AWKEVVTTQF FSFKNPVESF LETRSFSLKL KEGGLTSRTN SFKSENPQEK SPKTGMERSL SFNSWEIVTE VETEPMNKED EEIVEPTKPA
101: RNSLNGRNCE RIQITKPTIT PPTPFVFFSP RPVTELDAAA TTLQKVYKSY RTRRNLADCA VVVEELWWKT LDAAALNLSS VAFFEEEKHE TAVSKWARAR
201: TRAAKVGKGL SKDEKAQKLA LQHWLEAIDP RHRYGHNLHF YYDVWSASMS AQPFFYWLDI GDGKDVNLEH HPRSVLQKQC IKYLGPLERE AYEVIVEDGK
301: LMNKQSMTLI NSTEDSKSIF VLSTTRTLYV GQKKKGRFQH SSFLSGGATT AAGRLVAREG ILEAIWPYSG HYLPTEDNFN EFISFLEENN VDMTNVKVRN
401: IIFGCIHAKY EKWYVLTYLI
101: RNSLNGRNCE RIQITKPTIT PPTPFVFFSP RPVTELDAAA TTLQKVYKSY RTRRNLADCA VVVEELWWKT LDAAALNLSS VAFFEEEKHE TAVSKWARAR
201: TRAAKVGKGL SKDEKAQKLA LQHWLEAIDP RHRYGHNLHF YYDVWSASMS AQPFFYWLDI GDGKDVNLEH HPRSVLQKQC IKYLGPLERE AYEVIVEDGK
301: LMNKQSMTLI NSTEDSKSIF VLSTTRTLYV GQKKKGRFQH SSFLSGGATT AAGRLVAREG ILEAIWPYSG HYLPTEDNFN EFISFLEENN VDMTNVKVRN
401: IIFGCIHAKY EKWYVLTYLI
Arabidopsis Description
IQM4IQ domain-containing protein IQM4 [Source:UniProtKB/Swiss-Prot;Acc:O64851]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.