Factsheet for PGSC0003DMT400060938

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g080640.1.1	Tomato	nucleus	83.31	92.26
PGSC0003DMT400021529	Potato	cytosol	55.49	60.78
VIT_08s0007g07190.t01	Wine grape	cytosol	40.8	53.66
PGSC0003DMT400080788	Potato	nucleus	38.66	49.72
KRH71773	Soybean	nucleus	39.52	49.46
CDX88987	Canola	nucleus	38.23	48.55
CDY00568	Canola	nucleus	38.52	48.21
HORVU4Hr1G074540.1	Barley	cytosol	17.26	48.21
Bra014570.1-P	Field mustard	nucleus	38.23	47.6
KRH38004	Soybean	cytosol	40.37	47.56
HORVU2Hr1G015200.2	Barley	cytosol	27.1	47.5
AT3G58480.1	Thale cress	nucleus	38.66	47.13
HORVU2Hr1G074420.1	Barley	cytosol	9.84	46.62
GSMUA_Achr4P13570_001	Banana	cytosol	35.95	46.32
GSMUA_Achr4P06580_001	Banana	cytosol	35.66	46.21
HORVU7Hr1G052820.45	Barley	cytosol	16.26	46.15
HORVU1Hr1G045060.3	Barley	nucleus	24.25	46.07
HORVU5Hr1G023670.50	Barley	cytosol	16.12	45.75
Zm00001d047402_P001	Maize	cytosol	34.95	45.54
GSMUA_Achr9P21650_001	Banana	plastid, vacuole	36.66	45.25
TraesCS5A01G375700.1	Wheat	cytosol	34.38	45.13
TraesCS5B01G377900.1	Wheat	cytosol	34.52	44.98
HORVU4Hr1G052500.37	Barley	cytosol, nucleus	15.83	44.94
Os03t0374500-00	Rice	nucleus	36.52	44.37
PGSC0003DMT400082749	Potato	cytosol	29.39	44.21
EER92212	Sorghum	cytosol	35.95	43.9
TraesCS2B01G180000.1	Wheat	cytosol	35.66	43.71
TraesCS2A01G154900.1	Wheat	cytosol	35.09	43.62
TraesCS2D01G160200.1	Wheat	cytosol	35.52	43.61
Os07t0633400-01	Rice	cytosol	36.23	43.42
HORVU2Hr1G028140.2	Barley	cytosol	35.09	43.39
HORVU5Hr1G093140.18	Barley	cytosol, nucleus	35.09	43.08
GSMUA_Achr6P01520_001	Banana	cytosol	14.55	43.04
GSMUA_Achr4P11190_001	Banana	cytosol	35.38	42.32
PGSC0003DMT400021177	Potato	cytosol, mitochondrion, nucleus, plastid	29.53	42.24
HORVU2Hr1G028150.1	Barley	cytosol	35.09	41.62
TraesCS4D01G281600.1	Wheat	nucleus	35.52	40.62
TraesCS4A01G021000.1	Wheat	nucleus	35.09	40.33
HORVU4Hr1G074550.4	Barley	cytosol	34.81	39.87
Os10t0411500-01	Rice	plasma membrane	36.8	39.75
TraesCS5D01G385200.2	Wheat	cytosol	31.53	39.68
Os03t0167200-01	Rice	plasma membrane	34.38	39.51
EER97603	Sorghum	nucleus	35.66	39.49
Zm00001d032981_P001	Maize	cytosol	36.8	39.33
Zm00001d027815_P002	Maize	nucleus	35.66	38.94
PGSC0003DMT400006372	Potato	endoplasmic reticulum, extracellular, golgi	16.98	38.89
PGSC0003DMT400072375	Potato	cytosol	25.82	38.84
KXG40105	Sorghum	cytosol	34.95	38.46
EER94258	Sorghum	cytosol	36.8	38.39
Zm00001d022245_P001	Maize	cytosol	35.38	37.52
HORVU3Hr1G010590.3	Barley	nucleus	15.98	37.46
HORVU5Hr1G120690.3	Barley	nucleus	16.12	37.29
TraesCS4B01G282600.2	Wheat	nucleus	35.38	37.07
GSMUA_Achr3P29200_001	Banana	cytosol	33.38	36.56
PGSC0003DMT400022916	Potato	cytosol	25.39	34.23
PGSC0003DMT400000881	Potato	cytosol	25.96	33.89
GSMUA_Achr6P01560_001	Banana	mitochondrion	12.55	32.96
GSMUA_Achr6P01510_001	Banana	nucleus	9.42	31.88
HORVU2Hr1G074410.1	Barley	cytosol, nucleus	6.42	30.82
HORVU5Hr1G110660.2	Barley	mitochondrion	4.99	28.23
Zm00001d024699_P001	Maize	nucleus	12.7	28.16
TraesCS2B01G401000.1	Wheat	plastid	13.12	26.51

Protein Annotations

EnsemblPlants:PGSC0003DMT400060938	EnsemblPlantsGene:PGSC0003DMG400023702	EntrezGene:102591808	PANTHER:PTHR31250	PANTHER:PTHR31250:SF4	PGSC:PGSC0003DMG400023702
SEG:seg	UniParc:UPI0002959528	UniProt:M1C6Q5	MapMan:35.1	:	:

Description

Calmodulin binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023702]

Coordinates

chr10:-:57318770..57325082

Molecular Weight (calculated)

80502.1 Da

IEP (calculated)

7.138

GRAVY (calculated)

-0.706

Length

701 amino acids

Sequence
(BLAST)

001: MGTITDTPKV HPPWSSHTRK MSSQYSNEPT TNMDRTVSRC FEPSSRIRIT LMDEQPWNIL QPQVAKSRYQ EVVSFSCFRG TSIKVFDRDM GITYSCPFAN
101: FDDSDTKFES YLVRTLSFGT DATKNALPPI NFNDQNPQQP KMQKSYSSGK MILEGTLSYK RRELEARIGL TSFDNDEKTM SRSDSLMSSE EKHNMPDENT
201: KMIPLVCEKQ RDEAAVKLQK TYKSFRTRRR LADCAILVEQ RWWKVLDSVE LKHSSISFFD IEKPQTAFSR WSRALTRAAK IDPRHRYGHN LHFYYTKWLQ
301: VDSKQPFFYW LDIGEGKEVN LEKCPRSKLH QQCIKYLGPV EREAYEVVIV GGKFIYKQSG RVLDTRGGSE EAKWIFVLSV SKDLYIGMKQ KGTFQHSSFL
401: AGGATLSAGR LVIEDGILKA VWPHSGHYLP TRENFEEFMT FLEQHNIDVT IIQKSPCDGE EATFCRKEGG LGLRNSLSAP DFSQAIEESN AKCSDREKTN
501: PTTKYCKDTE NPIPLSRRSQ GSKPKMVVEI PPREDTFELF TKSVQSGDNI QPLDTPIDGY ETAEEYLSDT ELSVSKLNLF DDEDEEDYEE TIPTEKIMKR
601: IDTHRRTKSF QLAHQLSCRW TTGAGPRIGC MRDYPAELQV RVMEDVCLSP RATTFQTPPK YARPPSIFSI EATEDRRRTG SESSVFFQST PPVEEMQKYC
701: G

Best Arabidopsis Sequence Match ( AT3G13600.2 )
(BLAST)

001: MGVSFSCPFA EQDDVEAALD SVTVKSISFG DDDECKTPKR SVNFNDGTLE PTILKSMGSG KMVVEKSVSL KGMQLERMIS LNRSVKDNGF EIAKEFSVLD
101: PRNPKHEAAI KLQKVYKSFR TRRKLADCAV LVEQSWWKLL DFAELKRSSI SFFDIEKHET AISRWSRART RAAKVGKGLS KNGKAQKLAL QHWLEAIDPR
201: HRYGHNLHFY YNKWLHCQSR EPFFYWLDIG EGKEVNLVEK CPRLKLQQQC IKYLGPMERK AYEVVVEDGK FFYKHSGEIL QTSDMEDSES KWIFVLSTSK
301: VLYVGKKKKG TFQHSSFLAG GATVAAGRLV VENGVLKAVW PHSGHYQPTE ENFMDFLSFL RENDVDITDV KMSPTDEDEF SIYKQRSTHM RNHSLEEDLE
401: AEKTISFQDK VDPSGEEQTL MRNESISRKQ SDLETPEKME SFSTFGDEIQ SVGSKSTKVS EDYDSGDDEE EEEEMFELEQ ESMPSEQSSP RGEEKEEGET
501: KESEVVKITE ESILKRINSK KETKSFQLGK QLSCKWTTGA GPRIGCVRDY PSELQFQALE QVNLSPRSAS VSRLCFSSSS QTQTPQMSPL WRGMSLPTDI
601: TLTNS

Arabidopsis Description

IQM2Calmodulin-binding family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VF87]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.