Factsheet for GSMUA_Achr6P01560_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
peroxisome 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P01520_001	Banana	cytosol	55.43	62.45
Zm00001d024699_P001	Maize	nucleus	39.33	33.23
GSMUA_Achr8P24930_001	Banana	cytosol	34.46	23.9
GSMUA_Achr4P13570_001	Banana	cytosol	46.44	22.79
GSMUA_Achr9P21650_001	Banana	plastid, vacuole	47.57	22.36
GSMUA_Achr4P06580_001	Banana	cytosol	44.94	22.18
VIT_08s0007g07190.t01	Wine grape	cytosol	44.19	22.14
Bra021491.1-P	Field mustard	nucleus	40.07	21.7
GSMUA_Achr4P11190_001	Banana	cytosol	47.19	21.5
GSMUA_Achr4P09170_001	Banana	cytosol	38.95	21.4
GSMUA_Achr8P26270_001	Banana	plastid	38.2	21.25
GSMUA_Achr8P05470_001	Banana	plastid	39.7	21.24
Bra027414.1-P	Field mustard	nucleus	45.32	21.01
GSMUA_Achr7P09200_001	Banana	cytosol, extracellular, nucleus, plastid	40.07	20.98
Solyc01g044420.2.1	Tomato	nucleus	43.82	20.31
GSMUA_Achr10P...	Banana	endoplasmic reticulum	39.33	20.31
AT3G13600.1	Thale cress	nucleus	45.69	20.17
GSMUA_Achr3P03060_001	Banana	cytosol	28.84	20.16
GSMUA_Achr3P25890_001	Banana	mitochondrion	38.95	20.08
GSMUA_Achr6P04920_001	Banana	endoplasmic reticulum, vacuole	38.2	19.73
GSMUA_Achr4P08700_001	Banana	extracellular, nucleus, plastid, vacuole	39.33	19.59
GSMUA_Achr3P29200_001	Banana	cytosol	46.82	19.53
GSMUA_Achr6P05460_001	Banana	cytosol	39.7	19.49
KRH38004	Soybean	cytosol	42.32	18.99
KRG97321	Soybean	nucleus	39.7	18.96
KRH71773	Soybean	nucleus	39.7	18.93
Bra014570.1-P	Field mustard	nucleus	39.7	18.83
AT3G58480.1	Thale cress	nucleus	40.45	18.78
KRH58931	Soybean	nucleus	45.32	18.45
PGSC0003DMT400080788	Potato	nucleus	37.08	18.17
KRH42833	Soybean	cytosol	44.94	18.15
Solyc01g005800.2.1	Tomato	nucleus	44.19	17.85
GSMUA_Achr6P13300_001	Banana	cytosol	32.96	17.78
VIT_06s0004g00690.t01	Wine grape	nucleus	44.57	17.76
Solyc10g078650.1.1	Tomato	nucleus	40.07	17.63
Solyc10g080640.1.1	Tomato	nucleus	41.2	17.38
PGSC0003DMT400021529	Potato	cytosol	41.2	17.19
Bra001512.1-P	Field mustard	cytosol	32.58	16.45
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plastid	31.09	14.82
PGSC0003DMT400060938	Potato	nucleus, plastid	32.96	12.55
GSMUA_Achr3P32310_001	Banana	endoplasmic reticulum	39.33	11.65
GSMUA_Achr6P01510_001	Banana	nucleus	8.24	10.63

Protein Annotations

EnsemblPlants:GSMUA_Achr6P01560_001	EnsemblPlants:GSMUA_Achr6T01560_001	EnsemblPlantsGene:GSMUA_Achr6G01560_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR31250	PANTHER:PTHR31250:SF4	SEG:seg	TMHMM:TMhelix	UniParc:UPI00029568EC	UniProt:M0T3A4
MapMan:35.1	:	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G01560_001]

Coordinates

chr6:-:1017476..1019145

Molecular Weight (calculated)

31327.6 Da

IEP (calculated)

10.562

GRAVY (calculated)

-0.287

Length

267 amino acids

Sequence
(BLAST)

001: MLRSFALLPS SRSSQKSRVR RVNLRRSHQL FSVPETNKTS ASTFGFLVHV AGAMDSSSST HRHLPYLYKH VTSNSIALCS WFSLSLYIYI CIYTKLLWAS
101: RRQKRQRCGC RACSVVSSNF FLFSRTLEFL SLIINEGDHE AAVKLQKVYK SFRTRRQLAD CAVIVEQQWW KLIDFALLKL SSVSFFDIEK EESAVSRWSR
201: ARTRAAKVGK GLSKDQKAQK LALQHWLEAI DPRHRYGHNL HFYYDYWLHS ESRQPFFYWY VCRVPFS

Best Arabidopsis Sequence Match ( AT2G26190.2 )
(BLAST)

001: MGLSLSLLLS AWKEVVTTQF FSFKNPVESF LETRSFSLKL KEGGLTSRTN SFKSENPQEK SPKTGMERSL SFNSWEIVTE VETEPMNKED EEIVEPTKPA
101: RNSLNGRNCE RIQITKPTIT PPTPFVFFSP RPVTELDAAA TTLQKVYKSY RTRRNLADCA VVVEELWWKT LDAAALNLSS VAFFEEEKHE TAVSKWARAR
201: TRAAKVGKGL SKDEKAQKLA LQHWLEAIDP RHRYGHNLHF YYDVWSASMS AQPFFYWLDI GDGKDVNLEH HPRSVLQKQC IKYLGPLERE AYEVIVEDGK
301: LMNKQSMTLI NSTEDSKSIF VLSTTRTLYV GQKKKGRFQH SSFLSGGATT AAGRLVAREG ILEAIWPYSG HYLPTEDNFN EFISFLEENN VDMTNVKVRN
401: IIFGCIHAKY EKWYVLTYLI

Arabidopsis Description

IQM4IQ domain-containing protein IQM4 [Source:UniProtKB/Swiss-Prot;Acc:O64851]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.