Factsheet for GSMUA_Achr3P32310_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 3
endoplasmic reticulum 3
nucleus 1
mitochondrion 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P01120_001
GSMUA_Achr3P09330_001
GSMUA_Achr3P25040_001
GSMUA_Achr5P07820_001
GSMUA_Achr5P27590_001
GSMUA_Achr6P15990_001
GSMUA_Achr6P23670_001
GSMUA_Achr8P05790_001
GSMUA_Achr9P17280_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57010.1	GSMUA_Achr10P...	AT5G21274.1	21798944
AT5G57010.1	GSMUA_Achr10P...	AT5G21274.1	21798944
AT5G57010.1	GSMUA_Achr10P...	AT5G21274.1	21798944
AT5G57010.1	GSMUA_Achr10P...	AT5G21274.1	21798944
AT5G57010.1	GSMUA_Achr11P...	AT5G21274.1	21798944
AT5G57010.1	GSMUA_Achr2P01120_001	AT5G21274.1	21798944
AT5G57010.1	GSMUA_Achr3P09330_001	AT5G21274.1	21798944
AT5G57010.1	GSMUA_Achr3P25040_001	AT5G21274.1	21798944
AT5G57010.1	GSMUA_Achr5P07820_001	AT5G21274.1	21798944
AT5G57010.1	GSMUA_Achr5P27590_001	AT5G21274.1	21798944
AT5G57010.1	GSMUA_Achr6P15990_001	AT5G21274.1	21798944
AT5G57010.1	GSMUA_Achr6P23670_001	AT5G21274.1	21798944
AT5G57010.1	GSMUA_Achr8P05790_001	AT5G21274.1	21798944
AT5G57010.1	GSMUA_Achr9P17280_001	AT5G21274.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P09170_001	Banana	cytosol	37.62	69.75
GSMUA_Achr4P08700_001	Banana	extracellular, nucleus, plastid, vacuole	40.18	67.54
VIT_09s0002g04560.t01	Wine grape	cytosol	22.75	64.87
GSMUA_Achr8P24930_001	Banana	cytosol	26.97	63.12
Solyc03g121770.1.1	Tomato	cytosol	18.65	62.92
CDX75320	Canola	endoplasmic reticulum, extracellular	25.19	62.71
Bra017264.1-P	Field mustard	endoplasmic reticulum, extracellular	22.75	60.29
GSMUA_Achr8P26270_001	Banana	plastid	32.08	60.21
GSMUA_Achr8P05470_001	Banana	plastid	32.85	59.32
CDX77035	Canola	plastid	31.52	59.29
GSMUA_Achr3P25890_001	Banana	mitochondrion	34.07	59.27
CDX68935	Canola	plastid	30.41	58.42
Bra011409.1-P	Field mustard	plastid	30.41	58.05
VIT_11s0016g01970.t01	Wine grape	cytosol	33.63	56.64
VIT_04s0008g01070.t01	Wine grape	cytosol, extracellular, nucleus	33.85	56.48
KRH12419	Soybean	cytosol, plastid	32.96	56.36
KRH02687	Soybean	plastid	32.85	55.85
KRH37419	Soybean	cytosol, extracellular, nucleus, plastid	32.52	55.49
CDY35312	Canola	plastid	32.19	55.45
Bra034295.1-P	Field mustard	plastid	32.19	55.34
AT2G26190.1	Thale cress	plastid	32.3	54.7
GSMUA_Achr7P09200_001	Banana	cytosol, extracellular, nucleus, plastid	30.63	54.12
KRH19209	Soybean	cytosol	16.2	53.87
CDY45026	Canola	cytosol	30.52	53.4
AT5G57010.1	Thale cress	cytosol	28.86	52.53
GSMUA_Achr6P05460_001	Banana	cytosol	31.63	52.39
GSMUA_Achr10P...	Banana	endoplasmic reticulum	29.74	51.84
KRH47098	Soybean	nucleus	28.63	51.7
KRH44122	Soybean	nucleus	28.52	51.4
GSMUA_Achr6P04920_001	Banana	endoplasmic reticulum, vacuole	29.3	51.06
AT4G33050.5	Thale cress	plastid	31.52	50.71
Bra002773.1-P	Field mustard	cytosol	28.3	50.3
Bra034546.1-P	Field mustard	cytosol	30.52	50.0
CDY28281	Canola	cytosol, plastid	30.85	49.91
GSMUA_Achr3P03060_001	Banana	cytosol	20.75	48.95
KRH23287	Soybean	cytosol	27.41	48.62
KRH10031	Soybean	cytosol	24.86	47.56
GSMUA_Achr6P01520_001	Banana	cytosol	12.43	47.26
PGSC0003DMT400006372	Potato	endoplasmic reticulum, extracellular, golgi	15.87	46.73
Bra035643.1-P	Field mustard	cytosol	28.3	45.21
GSMUA_Achr4P06580_001	Banana	cytosol	26.42	43.99
GSMUA_Achr4P13570_001	Banana	cytosol	25.42	42.1
VIT_09s0002g01680.t01	Wine grape	plastid	46.28	41.37
GSMUA_Achr6P13300_001	Banana	cytosol	22.64	41.21
GSMUA_Achr9P21650_001	Banana	plastid, vacuole	25.97	41.2
GSMUA_Achr6P01560_001	Banana	mitochondrion	11.65	39.33
GSMUA_Achr4P11190_001	Banana	cytosol	25.31	38.91
GSMUA_Achr3P29200_001	Banana	cytosol	25.86	36.41
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plastid	22.31	35.89
GSMUA_Achr6P01510_001	Banana	nucleus	7.21	31.4

Protein Annotations

EnsemblPlants:GSMUA_Achr3P32310_001	EnsemblPlants:GSMUA_Achr3T32310_001	EnsemblPlantsGene:GSMUA_Achr3G32310_001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	ncoils:Coil	PANTHER:PTHR31250	PANTHER:PTHR31250:SF1	PFAM:PF00612
PFscan:PS50096	SEG:seg	SignalP:SignalP-noTM	SMART:SM00015	UniParc:UPI000295C374	UniProt:M0SJP5
MapMan:35.1	:	:	:	:	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G32310_001]

Coordinates

chr3:-:30221786..30228693

Molecular Weight (calculated)

101238.0 Da

IEP (calculated)

9.486

GRAVY (calculated)

-0.638

Length

901 amino acids

Sequence
(BLAST)

001: MGLSLSLLSW AWIRCLWTRT LGSTETKDVL ARSISFGAKD IKMALRSLSF KPSDASNEAV SSVSDSTVTD LPHRLPQFSS PRPSNELDAA ATKLQNVYKS
101: YRTRRNLADC AVVVEELWWK ALDFASLEHS SMSFFKVEKP ETAVSRWARA RTRAAKVGKG LSKDEKAQKL ALQHWLEAID PRHRYGHNLH CYYDVWFESE
201: STQPFFYWLD VGDGREINLE KYPRSHLQNQ RIQYLGPKER EAYEVMVKDG KLVYKVSGMP VSTTEGSKWI FVLSTSRVLY VGQQKKKGAF QHSSFLAGGA
301: TTAAGRLVAT QGVLQAIWPY SGHYLPTEDN FKEFITFLEN NDVDLSNVKR CSVDDDDYPS LEKRNDEIEA DANKADALAV STTVEVTEAT EPSEDPRPDE
401: TMENRVDEVV ASEFDKRISC RWTTAAGARI GCVRDYPPDL RSKALEQANL SPRVTPSPSG SRVPIPSPRP SPRVRLVAVG NRNRGFPLFA PAIRSMGGGS
501: GKWRINSLIG LGKQDKLDQE KAEEGCSESG SRRWKFWKKS SQPGASESHR SASEVVEEEE VAALYASTSV CSPHNDFKVV RQAFAAIRIQ AAFRGCLARR
601: ALSALKGIVR LQALVRGRRV RKQAAAAATL ECMQARAQAA QRRIDNCRSK VAVLKEAEDG WCDSPGTLEE IKAKLQMRRD GAMKRERAIA YSLCKKQWRP
701: NDLNKCSKPP VLCFDDHETF HWRRSRHWMA TTAKPWENRF MEQIQIEPFE IENYGGSDCT NHVDPRVVKA KRNDVATRPS ANHASVLREK GRRVQIDSSL
801: EFQCDESSSS SSSSVCTPTP ASTFLLLTPQ RTEQSNIKAK QKACNNGRTT IERRMSSGHV QYFGSSDSNK NAATDSSIST SWRSKSWKRS IDEENYYSNE
901: K

Best Arabidopsis Sequence Match ( AT2G26190.1 )
(BLAST)

001: MGLSLSLLLS AWKEVVTTQF FSFKNPVESF LETRSFSLKL KEGGLTSRTN SFKSENPQEK SPKTGMERSL SFNSWEIVTE VETEPMNKED EEIVEPTKPA
101: RNSLNGRNCE RIQITKPTIT PPTPFVFFSP RPVTELDAAA TTLQKVYKSY RTRRNLADCA VVVEELWWKT LDAAALNLSS VAFFEEEKHE TAVSKWARAR
201: TRAAKVGKGL SKDEKAQKLA LQHWLEAIDP RHRYGHNLHF YYDVWSASMS AQPFFYWLDI GDGKDVNLEH HPRSVLQKQC IKYLGPLERE AYEVIVEDGK
301: LMNKQSMTLI NSTEDSKSIF VLSTTRTLYV GQKKKGRFQH SSFLSGGATT AAGRLVAREG ILEAIWPYSG HYLPTEDNFN EFISFLEENN VDMTNVKRCS
401: VNEEYSSFNS SGYEEEATKE EEAEKKPAET IVTEEQEEEK ERERPVFQLA KRLSCKWNSG VGPRIGCVRD YPMELQSQAF EQVSLSPRIS PGSTRFPSPY
501: GPIPSPRPSP RVRVSPRLAY MGIPSPRVQV NC

Arabidopsis Description

IQM4IQ domain-containing protein IQM4 [Source:UniProtKB/Swiss-Prot;Acc:O64851]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.