CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum

Predictor Summary:

nucleus 2
extracellular 4
golgi 3
plasma membrane 3
endoplasmic reticulum 4
vacuole 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017264.1-P	Field mustard	endoplasmic reticulum, extracellular	92.54	98.53
CDX68935	Canola	plastid	96.41	74.41
CDY45026	Canola	cytosol	90.06	63.3
Zm00001d050807_P001	Maize	cytosol	24.86	62.94
CDX77035	Canola	plastid	81.49	61.59
CDY28281	Canola	cytosol, plastid	90.06	58.53
AT4G33050.5	Thale cress	plastid	88.4	57.14
CDY35312	Canola	plastid	81.22	56.21
KRH19209	Soybean	cytosol	41.16	54.98
Zm00001d036000_P001	Maize	cytosol	21.27	54.61
PGSC0003DMT400021177	Potato	cytosol, mitochondrion, nucleus, plastid	69.06	51.02
Zm00001d042156_P001	Maize	mitochondrion	25.97	49.47
GSMUA_Achr4P09170_001	Banana	cytosol	65.19	48.56
GSMUA_Achr8P24930_001	Banana	cytosol	50.55	47.53
GSMUA_Achr8P26270_001	Banana	plastid	62.71	47.29
VIT_04s0008g01070.t01	Wine grape	cytosol, extracellular, nucleus	70.44	47.22
GSMUA_Achr8P05470_001	Banana	plastid	63.81	46.29
KRH12419	Soybean	cytosol, plastid	66.3	45.54
KRH02687	Soybean	plastid	66.57	45.47
KRH37419	Soybean	cytosol, extracellular, nucleus, plastid	65.75	45.08
GSMUA_Achr3P25890_001	Banana	mitochondrion	64.36	44.98
Solyc08g062930.1.1	Tomato	cytosol	48.34	44.87
CDY60813	Canola	cytosol	56.35	44.16
GSMUA_Achr4P08700_001	Banana	extracellular, nucleus, plastid, vacuole	64.92	43.84
TraesCS3B01G238500.1	Wheat	cytosol, plastid	64.64	43.25
Zm00001d009755_P001	Maize	plastid	53.04	43.05
TraesCS3D01G209200.2	Wheat	plastid	64.09	42.03
TraesCS3A01G206400.1	Wheat	plastid	64.36	41.91
HORVU3Hr1G049640.1	Barley	plastid	62.98	41.38
Os01t0570800-01	Rice	plastid	64.64	41.12
EES03151	Sorghum	mitochondrion, plastid	62.71	39.41
Zm00001d044253_P001	Maize	plastid	61.05	39.32
CDY06038	Canola	mitochondrion, nucleus	7.46	37.5
CDY37478	Canola	nucleus	56.35	36.76
EES18807	Sorghum	plastid	58.29	36.7
CDX97500	Canola	nucleus	56.35	35.42
CDY23623	Canola	nucleus	56.08	35.37
CDX88987	Canola	nucleus	53.87	35.33
CDY00568	Canola	nucleus	54.14	35.0
Zm00001d011228_P001	Maize	plastid	52.76	34.73
CDY13342	Canola	cytosol	42.54	33.77
CDX67541	Canola	cytosol	42.54	33.77
CDX95381	Canola	cytosol	42.54	33.77
CDX76252	Canola	cytosol	42.27	33.55
CDX82532	Canola	cytosol	43.09	31.08
CDX80650	Canola	extracellular	7.18	29.89
CDY13341	Canola	cytosol	14.92	29.83
CDX75719	Canola	cytosol	40.06	27.78
GSMUA_Achr3P32310_001	Banana	endoplasmic reticulum	62.71	25.19
CDY45027	Canola	extracellular	0.83	25.0

Protein Annotations

EnsemblPlants:CDX75320	EnsemblPlantsGene:GSBRNA2T00121196001	PANTHER:PTHR31250	PANTHER:PTHR31250:SF1	ProteinID:CDX75320	ProteinID:CDX75320.1
SEG:seg	SignalP:SignalP-noTM	UniParc:UPI0004EEB830	MapMan:35.1	:	:

Description

BnaA01g03820D

Coordinates

chrLK031804:-:644845..646794

Molecular Weight (calculated)

41312.0 Da

IEP (calculated)

8.632

GRAVY (calculated)

-0.569

Length

362 amino acids

Sequence
(BLAST)

001: MFHILFFFLM WKTLDGATLD LSSVSFFKEE KHEPAASKWT RARKRAAKVG KGLSKDEKAQ KLALQHWLEA IDPRHRYGHN LHFYYDVWSA SKSSQPFFYW
101: LDIGDGKDVN LEKHPRSVLQ KQCITYLGPM EREAYEVIVE DGRLLYKQSM SPINSTEESK SIFVLSTTRS LYVGKKKKGV FQHSSFLSGG ATTAAGRLVA
201: RDGILEAIWP YSGHYLPTEE NFKEFISFLE EHNVDLTNVK RCAVNEEYSS SFKSTGEEEE EAKEISQEVE MPSEQEERAR PMFDHAKRLS CKWSSGYGPR
301: IGCVRDYPME LQTQALEQVS LSPRVSTANT YGPIPSPRPS PKVRVSPRLS YMGIPSPRAV KC

Best Arabidopsis Sequence Match ( AT2G26190.1 )
(BLAST)

001: MGLSLSLLLS AWKEVVTTQF FSFKNPVESF LETRSFSLKL KEGGLTSRTN SFKSENPQEK SPKTGMERSL SFNSWEIVTE VETEPMNKED EEIVEPTKPA
101: RNSLNGRNCE RIQITKPTIT PPTPFVFFSP RPVTELDAAA TTLQKVYKSY RTRRNLADCA VVVEELWWKT LDAAALNLSS VAFFEEEKHE TAVSKWARAR
201: TRAAKVGKGL SKDEKAQKLA LQHWLEAIDP RHRYGHNLHF YYDVWSASMS AQPFFYWLDI GDGKDVNLEH HPRSVLQKQC IKYLGPLERE AYEVIVEDGK
301: LMNKQSMTLI NSTEDSKSIF VLSTTRTLYV GQKKKGRFQH SSFLSGGATT AAGRLVAREG ILEAIWPYSG HYLPTEDNFN EFISFLEENN VDMTNVKRCS
401: VNEEYSSFNS SGYEEEATKE EEAEKKPAET IVTEEQEEEK ERERPVFQLA KRLSCKWNSG VGPRIGCVRD YPMELQSQAF EQVSLSPRIS PGSTRFPSPY
501: GPIPSPRPSP RVRVSPRLAY MGIPSPRVQV NC

Arabidopsis Description

IQM4IQ domain-containing protein IQM4 [Source:UniProtKB/Swiss-Prot;Acc:O64851]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.