Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88987 | Canola | nucleus | 95.71 | 97.1 |
| CDY06038 | Canola | mitochondrion, nucleus | 11.25 | 87.5 |
| AT3G58480.1 | Thale cress | nucleus | 86.25 | 84.0 |
| CDY60813 | Canola | cytosol | 46.07 | 55.84 |
| VIT_08s0007g07190.t01 | Wine grape | cytosol | 52.68 | 55.35 |
| KRH71773 | Soybean | nucleus | 55.18 | 55.18 |
| CDX75320 | Canola | endoplasmic reticulum, extracellular | 35.0 | 54.14 |
| KRH38004 | Soybean | cytosol | 54.64 | 51.43 |
| CDX80650 | Canola | extracellular | 7.68 | 49.43 |
| CDY37478 | Canola | nucleus | 48.75 | 49.19 |
| CDX68935 | Canola | plastid | 40.18 | 47.97 |
| CDY23623 | Canola | nucleus | 49.11 | 47.91 |
| CDX97500 | Canola | nucleus | 49.11 | 47.74 |
| CDX77035 | Canola | plastid | 40.54 | 47.39 |
| Solyc10g078650.1.1 | Tomato | nucleus | 50.36 | 46.46 |
| Solyc10g080640.1.1 | Tomato | nucleus | 51.96 | 45.97 |
| CDY13341 | Canola | cytosol | 14.46 | 44.75 |
| CDY13342 | Canola | cytosol | 36.43 | 44.74 |
| CDX67541 | Canola | cytosol | 36.43 | 44.74 |
| CDY35312 | Canola | plastid | 41.61 | 44.55 |
| CDX76252 | Canola | cytosol | 35.89 | 44.08 |
| PGSC0003DMT400021529 | Potato | cytosol | 50.18 | 43.91 |
| CDY45026 | Canola | cytosol | 40.36 | 43.88 |
| CDX95381 | Canola | cytosol | 35.71 | 43.86 |
| CDY28281 | Canola | cytosol, plastid | 41.07 | 41.29 |
| CDX75719 | Canola | cytosol | 37.32 | 40.04 |
| PGSC0003DMT400060938 | Potato | nucleus, plastid | 48.21 | 38.52 |
| CDX82532 | Canola | cytosol | 33.04 | 36.85 |
| CDY45027 | Canola | extracellular | 0.71 | 33.33 |
Protein Annotations
| EnsemblPlants:CDY00568 | EnsemblPlantsGene:GSBRNA2T00110325001 | PANTHER:PTHR31250 | PANTHER:PTHR31250:SF14 | ProteinID:CDY00568 | ProteinID:CDY00568.1 |
| SEG:seg | UniParc:UPI0004EE17CE | MapMan:35.1 | : | : | : |
Description
BnaC04g23570D
Coordinates
chrLK031920:+:341322..344028
Molecular Weight (calculated)
65018.5 Da
IEP (calculated)
6.804
GRAVY (calculated)
-0.817
Length
560 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTILRSVSF NNDNESDSTI TEPPETRKTL YNRSLSMKGT ERPSLSSEDV ENNLSLKPLT FMKEDDKYKI RQWKPLSVND HVNEFLALIS DSRYQAALKL
101: QKVYRSFRTR RRLADCAVVV EQRWWKVLDF AELKRSSISF FEIEKQETAV SRWSRARTRA AKVGKGLSKD EKARKLALQH WLEAIDPRHR YGHNLQFYYH
201: AWLHCDSYQP FFYWLDIGEG KELNHERCPR TKLYQQSIKY LGPTEREEYE VVIEDSKLIY KQRGIVLDTK EGPPDTKWIF VLSVSKIMYV GMKKKGNFQH
301: SSFLAGGATL SAGRIVVDDG VLKAVWPHSG HYLPTEENFL AFMSFLRENN VDLTDVKKSP DEDDGEHHFK VKRMPSKIKE VEEEPCDFVD AETGLSPNAK
401: PKNHPELHTL TRFHPKDKDM AEDDDEEEPE TPSEEGYETA EETFIAEEEF AYPKSHLFDE DIEEYEKPVP KEKIMKRIDS HKGLKSYQLA ERLHSRWSTG
501: AGPRISCMRD YPSELQFRVL EQAQLSPRAS SSSNPSPFAP VRSRGTSLGR SPFSQELERL
101: QKVYRSFRTR RRLADCAVVV EQRWWKVLDF AELKRSSISF FEIEKQETAV SRWSRARTRA AKVGKGLSKD EKARKLALQH WLEAIDPRHR YGHNLQFYYH
201: AWLHCDSYQP FFYWLDIGEG KELNHERCPR TKLYQQSIKY LGPTEREEYE VVIEDSKLIY KQRGIVLDTK EGPPDTKWIF VLSVSKIMYV GMKKKGNFQH
301: SSFLAGGATL SAGRIVVDDG VLKAVWPHSG HYLPTEENFL AFMSFLRENN VDLTDVKKSP DEDDGEHHFK VKRMPSKIKE VEEEPCDFVD AETGLSPNAK
401: PKNHPELHTL TRFHPKDKDM AEDDDEEEPE TPSEEGYETA EETFIAEEEF AYPKSHLFDE DIEEYEKPVP KEKIMKRIDS HKGLKSYQLA ERLHSRWSTG
501: AGPRISCMRD YPSELQFRVL EQAQLSPRAS SSSNPSPFAP VRSRGTSLGR SPFSQELERL
001: METKTILRSI SFNDIDSDST ITESPEARKT LYNRSLSGKG TQRSRISPGD VENNFSIKPL TFMKEDDRYK MRIWKPVCEN EHAKEFLALL LGDGTYQAAL
101: KLQKVYRSFR TRRRLADCAV VVEQRWWKVL DFAELKRSSI SFFEIEKQET AVSRWSRART RAAKVGKGLS KDEKARKLAL QHWLEAIDPR HRYGHNLQFY
201: YHAWLHCDSK QPFFYWLDIG QGKELNHERC PRSKLYQQSI KYLGPTEREA YEVIIEDGKL MYKQSGIVLD TKEGPPDAKW IFVLSVSKIL YVGMKKKGNF
301: QHSSFLAGGA TLSAGRIVVD DGVLKAVWPH SGHYLPTEEN FQAFMSFLRE NNVDLANVKK NPDEEDGEAP AKVKRMPSRI KETEEEHCDF VDAETGFSPN
401: TKPNNHAELQ TLSRFHSKLS RLDEIPDEDD NMIEEEQDDE EEPETPSEQG YETAEETFIA EEEFTYPKSN LFDEDIEDYE KPVLKEKIMR RIDSHKGIKS
501: YQLAERLHSR WSTGAGPRIS CMRDYPSELQ FRVLEQAHLS PRASSNSSKI SPFAPVRTRG TSLGRSPLAE ELENL
101: KLQKVYRSFR TRRRLADCAV VVEQRWWKVL DFAELKRSSI SFFEIEKQET AVSRWSRART RAAKVGKGLS KDEKARKLAL QHWLEAIDPR HRYGHNLQFY
201: YHAWLHCDSK QPFFYWLDIG QGKELNHERC PRSKLYQQSI KYLGPTEREA YEVIIEDGKL MYKQSGIVLD TKEGPPDAKW IFVLSVSKIL YVGMKKKGNF
301: QHSSFLAGGA TLSAGRIVVD DGVLKAVWPH SGHYLPTEEN FQAFMSFLRE NNVDLANVKK NPDEEDGEAP AKVKRMPSRI KETEEEHCDF VDAETGFSPN
401: TKPNNHAELQ TLSRFHSKLS RLDEIPDEDD NMIEEEQDDE EEPETPSEQG YETAEETFIA EEEFTYPKSN LFDEDIEDYE KPVLKEKIMR RIDSHKGIKS
501: YQLAERLHSR WSTGAGPRIS CMRDYPSELQ FRVLEQAHLS PRASSNSSKI SPFAPVRTRG TSLGRSPLAE ELENL
Arabidopsis Description
IQM6IQ domain-containing protein IQM6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2G8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.