CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35312	Canola	plastid	97.7	89.48
CDX75320	Canola	endoplasmic reticulum, extracellular	61.59	81.49
AT2G26190.1	Thale cress	plastid	89.56	80.64
CDX68935	Canola	plastid	75.16	76.76
CDY45026	Canola	cytosol	73.07	67.96
CDY28281	Canola	cytosol, plastid	75.99	65.35
Zm00001d050807_P001	Maize	cytosol	18.37	61.54
PGSC0003DMT400021177	Potato	cytosol, mitochondrion, nucleus, plastid	62.63	61.22
GSMUA_Achr4P09170_001	Banana	cytosol	59.08	58.23
KRH19209	Soybean	cytosol	32.78	57.93
VIT_04s0008g01070.t01	Wine grape	cytosol, extracellular, nucleus	64.93	57.59
GSMUA_Achr8P26270_001	Banana	plastid	57.2	57.08
GSMUA_Achr8P24930_001	Banana	cytosol	45.51	56.62
KRH12419	Soybean	cytosol, plastid	62.21	56.55
GSMUA_Achr8P05470_001	Banana	plastid	58.46	56.11
KRH02687	Soybean	plastid	62.0	56.04
KRH37419	Soybean	cytosol, extracellular, nucleus, plastid	61.59	55.87
GSMUA_Achr3P25890_001	Banana	mitochondrion	59.92	55.41
GSMUA_Achr4P08700_001	Banana	extracellular, nucleus, plastid, vacuole	60.96	54.48
Zm00001d036000_P001	Maize	cytosol	15.45	52.48
CDY45027	Canola	extracellular	1.25	50.0
Zm00001d042156_P001	Maize	mitochondrion	19.83	50.0
TraesCS3B01G238500.1	Wheat	cytosol, plastid	55.53	49.17
CDY60813	Canola	cytosol	47.39	49.13
Zm00001d009755_P001	Maize	plastid	45.72	49.1
TraesCS3D01G209200.2	Wheat	plastid	55.32	48.01
Solyc08g062930.1.1	Tomato	cytosol	38.83	47.69
TraesCS3A01G206400.1	Wheat	plastid	55.32	47.66
HORVU3Hr1G049640.1	Barley	plastid	54.7	47.55
Os01t0570800-01	Rice	plastid	56.37	47.45
Zm00001d044253_P001	Maize	plastid	54.7	46.62
EES03151	Sorghum	mitochondrion, plastid	55.95	46.53
CDY13341	Canola	cytosol	16.49	43.65
CDY37478	Canola	nucleus	49.27	42.52
EES18807	Sorghum	plastid	50.31	41.91
CDY23623	Canola	nucleus	49.69	41.46
Zm00001d011228_P001	Maize	plastid	47.39	41.27
CDX97500	Canola	nucleus	49.48	41.15
CDX88987	Canola	nucleus	47.39	41.12
CDY00568	Canola	nucleus	47.39	40.54
CDX95381	Canola	cytosol	38.41	40.35
CDY13342	Canola	cytosol	38.0	39.91
CDX76252	Canola	cytosol	37.79	39.69
CDX67541	Canola	cytosol	37.79	39.69
CDX80650	Canola	extracellular	6.68	36.78
CDY06038	Canola	mitochondrion, nucleus	5.22	34.72
CDX75719	Canola	cytosol	36.74	33.72
CDX82532	Canola	cytosol	34.66	33.07
GSMUA_Achr3P32310_001	Banana	endoplasmic reticulum	59.29	31.52

Protein Annotations

EnsemblPlants:CDX77035	EnsemblPlantsGene:GSBRNA2T00127605001	PANTHER:PTHR31250	PANTHER:PTHR31250:SF1	ProteinID:CDX77035	ProteinID:CDX77035.1
SEG:seg	UniParc:UPI0004EEC5D5	MapMan:35.1	:	:	:

Description

BnaC04g38300D

Coordinates

chrLK031809:-:598653..601352

Molecular Weight (calculated)

54477.6 Da

IEP (calculated)

8.253

GRAVY (calculated)

-0.521

Length

479 amino acids

Sequence
(BLAST)

001: MGLSLSLLVS ACKEVLSNQF FSFKNPVESF LGIRSFGLTS RTNSFKSEAP ENSPKAAGME RIQITKPTIT PPKPFVFFSP RPITELDAAA TTLQKVYKSY
101: RTRRNLADCA VVVEELWWKT LDSAALKLSS VSFFEEEKHE TAVSKWARAR TRAAKVGKGL SKDEKAQKLA LQHWLEAIDP RHRYGHNLHF YYDVWSASMS
201: AQPFFYWLDV GDGKDVNLEH HPRSVLQKQC IKYLGPMERE AYEVIVEDGR LMYKQNMTLI TSTEESKTIF VLSTTRTLYV GQKKKGVFQH SSFLSGGATT
301: AAGRLVAREG VLEAIWPYSG HYLPTEDNFK EFISFLEENN VDLTNVKRCT VNEEYSSFKY EEETKEDETE NKHVETDISE DKEEEEKETQ RPVFELSKRL
401: SCKWNSGVGP RIGCVRDYPM ELQSQAFEQV SLSPRISPAS ARFPSPYGPI PSPRPSPRVR VSPRLAYMGI PSPRVQVNC

Best Arabidopsis Sequence Match ( AT2G26190.3 )
(BLAST)

001: MGLSLSLLLS AWKEVVTTQF FSFKNPVESF LETRSFSLKL KEGGLTSRTN SFKSENPQEK SPKTGMERSL SFNSWEIVTE VETEPMNKED EEIVEPTKPA
101: RNSLNGRNCE RIQITKPTIT PPTPFVFFSP RPVTELDAAA TTLQKVYKSY RTRRNLADCA VVVEELWWKT LDAAALNLSS VAFFEEEKHE TAVSKWARAR
201: TRAAKVGKGL SKDEKAQKLA LQHWLEAIDP RHRYGHNLHF YYDVWSASMS AQPFFYWLDI GDGKDVNLEH HPRSVLQKQC IKYLGPLERE AYEVIVEDGK
301: LMNKQSMTLI NSTEDSKSIF VLSTTRTLYV GQKKKGRFQH SSFLSGGATT AAGRLVAREG ILEAIWPYSG HYLPTEDNFN EFISFLEENN VDMTNVKRCS
401: VNEEYSSFNS SGYEEEATKE EEAEKKPAET IVTEEQEEEK ERERPVFQLA KRLSCKWNSG VGPRIGCVRD YPMELQSQAF EQVSLSPRIS PGSTRFPSPY
501: GPIPSPRPSP RVRVSPRLAY MGIPSPRVQV NC

Arabidopsis Description

IQM4IQ domain-containing protein IQM4 [Source:UniProtKB/Swiss-Prot;Acc:O64851]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.