CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80650	Canola	extracellular	33.33	27.59
HORVU5Hr1G110660.2	Barley	mitochondrion	40.28	23.39
HORVU2Hr1G074410.1	Barley	cytosol, nucleus	45.83	22.6
GSMUA_Achr6P01510_001	Banana	nucleus	43.06	14.98
CDX88987	Canola	nucleus	87.5	11.41
CDY00568	Canola	nucleus	87.5	11.25
HORVU3Hr1G010590.3	Barley	nucleus	45.83	11.04
CDX75320	Canola	endoplasmic reticulum, extracellular	37.5	7.46
CDY60813	Canola	cytosol	47.22	7.36
CDX82532	Canola	cytosol	47.22	6.77
CDX67541	Canola	cytosol	41.67	6.58
CDY13342	Canola	cytosol	41.67	6.58
CDX76252	Canola	cytosol	40.28	6.36
TraesCS5B01G377900.1	Wheat	cytosol	47.22	6.32
CDX95381	Canola	cytosol	38.89	6.14
CDX75719	Canola	cytosol	44.44	6.13
CDY37478	Canola	nucleus	47.22	6.13
TraesCS5A01G375700.1	Wheat	cytosol	44.44	5.99
Zm00001d047402_P001	Maize	cytosol	44.44	5.95
Os03t0374500-00	Rice	nucleus	47.22	5.89
CDX68935	Canola	plastid	37.5	5.76
EER92212	Sorghum	cytosol	45.83	5.75
CDY23623	Canola	nucleus	45.83	5.75
TraesCS5D01G385200.2	Wheat	cytosol	44.44	5.75
CDX97500	Canola	nucleus	45.83	5.73
CDY45026	Canola	cytosol	37.5	5.24
CDX77035	Canola	plastid	34.72	5.22
CDY28281	Canola	cytosol, plastid	37.5	4.85
CDY35312	Canola	plastid	34.72	4.78
TraesCS2B01G401000.1	Wheat	plastid	9.72	2.02
CDY45027	Canola	extracellular	0.0	0.0
HORVU2Hr1G074420.1	Barley	cytosol	0.0	0.0
CDY13341	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY06038	EnsemblPlantsGene:GSBRNA2T00121891001	PANTHER:PTHR31250	PANTHER:PTHR31250:SF14	ProteinID:CDY06038	ProteinID:CDY06038.1
SEG:seg	UniParc:UPI0004EEED08	MapMan:35.1	:	:	:

Description

BnaA09g37420D

Coordinates

chrLK031967:-:417968..420079

Molecular Weight (calculated)

8012.4 Da

IEP (calculated)

10.320

GRAVY (calculated)

-0.792

Length

72 amino acids

Sequence
(BLAST)

1: MKRIDSHNGM KSYQLAERLH SRWSTGAGPT ISCMRDYPSE LQFRVLEQAQ PSPRASSFSN PSPFAPNKGV SS

Best Arabidopsis Sequence Match ( AT3G58480.1 )
(BLAST)

001: METKTILRSI SFNDIDSDST ITESPEARKT LYNRSLSGKG TQRSRISPGD VENNFSIKPL TFMKEDDRYK MRIWKPVCEN EHAKEFLALL LGDGTYQAAL
101: KLQKVYRSFR TRRRLADCAV VVEQRWWKVL DFAELKRSSI SFFEIEKQET AVSRWSRART RAAKVGKGLS KDEKARKLAL QHWLEAIDPR HRYGHNLQFY
201: YHAWLHCDSK QPFFYWLDIG QGKELNHERC PRSKLYQQSI KYLGPTEREA YEVIIEDGKL MYKQSGIVLD TKEGPPDAKW IFVLSVSKIL YVGMKKKGNF
301: QHSSFLAGGA TLSAGRIVVD DGVLKAVWPH SGHYLPTEEN FQAFMSFLRE NNVDLANVKK NPDEEDGEAP AKVKRMPSRI KETEEEHCDF VDAETGFSPN
401: TKPNNHAELQ TLSRFHSKLS RLDEIPDEDD NMIEEEQDDE EEPETPSEQG YETAEETFIA EEEFTYPKSN LFDEDIEDYE KPVLKEKIMR RIDSHKGIKS
501: YQLAERLHSR WSTGAGPRIS CMRDYPSELQ FRVLEQAHLS PRASSNSSKI SPFAPVRTRG TSLGRSPLAE ELENL

Arabidopsis Description

IQM6IQ domain-containing protein IQM6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2G8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.