Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014570.1-P | Field mustard | nucleus | 98.55 | 96.63 |
| CDY00568 | Canola | nucleus | 97.1 | 95.71 |
| CDY06038 | Canola | mitochondrion, nucleus | 11.41 | 87.5 |
| AT3G58480.1 | Thale cress | nucleus | 85.51 | 82.09 |
| CDY60813 | Canola | cytosol | 46.74 | 55.84 |
| VIT_08s0007g07190.t01 | Wine grape | cytosol | 53.08 | 54.97 |
| KRH71773 | Soybean | nucleus | 55.62 | 54.82 |
| CDX75320 | Canola | endoplasmic reticulum, extracellular | 35.33 | 53.87 |
| KRH38004 | Soybean | cytosol | 54.89 | 50.92 |
| CDX80650 | Canola | extracellular | 7.79 | 49.43 |
| CDY37478 | Canola | nucleus | 49.64 | 49.37 |
| CDY23623 | Canola | nucleus | 50.36 | 48.43 |
| CDX97500 | Canola | nucleus | 50.36 | 48.26 |
| CDX68935 | Canola | plastid | 40.76 | 47.97 |
| CDX77035 | Canola | plastid | 41.12 | 47.39 |
| Solyc10g078650.1.1 | Tomato | nucleus | 50.91 | 46.29 |
| Solyc10g080640.1.1 | Tomato | nucleus | 52.36 | 45.66 |
| CDX67541 | Canola | cytosol | 36.78 | 44.52 |
| CDY13342 | Canola | cytosol | 36.78 | 44.52 |
| CDY13341 | Canola | cytosol | 14.49 | 44.2 |
| CDY35312 | Canola | plastid | 41.85 | 44.17 |
| CDX76252 | Canola | cytosol | 36.23 | 43.86 |
| CDY45026 | Canola | cytosol | 40.76 | 43.69 |
| CDX95381 | Canola | cytosol | 36.05 | 43.64 |
| PGSC0003DMT400021529 | Potato | cytosol | 50.54 | 43.59 |
| CDY28281 | Canola | cytosol, plastid | 41.49 | 41.11 |
| CDX75719 | Canola | cytosol | 38.04 | 40.23 |
| PGSC0003DMT400060938 | Potato | nucleus, plastid | 48.55 | 38.23 |
| CDX82532 | Canola | cytosol | 33.33 | 36.65 |
| CDY45027 | Canola | extracellular | 0.72 | 33.33 |
Protein Annotations
| EnsemblPlants:CDX88987 | EnsemblPlantsGene:GSBRNA2T00149099001 | PANTHER:PTHR31250 | PANTHER:PTHR31250:SF14 | ProteinID:CDX88987 | ProteinID:CDX88987.1 |
| SEG:seg | UniParc:UPI0004EDCCFE | MapMan:35.1 | : | : | : |
Description
BnaA04g01990D
Coordinates
chrLK031857:+:389062..392173
Molecular Weight (calculated)
64186.5 Da
IEP (calculated)
6.913
GRAVY (calculated)
-0.862
Length
552 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTILRSVSF NNDNESDSTI TEPPETRKTM YDRSLSMKGT QRPNLSSEDV EDNLSSKPLT FMKEDDKYKI RQWKPLSVND HVNEFLALIS DGRYQAALKL
101: QKVYRSFRTR RRLADCAVVV EQRWWKVLDF AELKRSSISF FEIEKQETAV SRWSRARTRA AKVGKGLSKD EKARKLALQH WLEAIDPRHR YGHNLQFYYH
201: AWLHCDSYQP FFYWLDIGEG KELNHERCPR TKLYQQSIKY LGPTEREEYE VVIEDSKLIY KKSGIVLDTK EGPPDTKWIF VLSVSKIMYV GMKKKGNFQH
301: SSFLAGGATL SAGRIVVEEG VLKAVWPHSG HYLPTEENFL AFMSFLRENN VDLTDVKKSP DEDDGEHHFK VKRMPSKIKE VEEEPPNAKP KNHPELHTLT
401: RFHPKDKDMA EDNQDDDEEE PETPSEEGYE TAEETFIAEE EFAYPKSHLF DEDIEEYEKP VPKEKIMKRI DSHKGLKSYQ LAERLHSRWS TGAGPRISCM
501: RDYPSELQFR VLEQAQLSPR ASSSSNPSPF APVRSRGTSL GRSPFSQELE RL
101: QKVYRSFRTR RRLADCAVVV EQRWWKVLDF AELKRSSISF FEIEKQETAV SRWSRARTRA AKVGKGLSKD EKARKLALQH WLEAIDPRHR YGHNLQFYYH
201: AWLHCDSYQP FFYWLDIGEG KELNHERCPR TKLYQQSIKY LGPTEREEYE VVIEDSKLIY KKSGIVLDTK EGPPDTKWIF VLSVSKIMYV GMKKKGNFQH
301: SSFLAGGATL SAGRIVVEEG VLKAVWPHSG HYLPTEENFL AFMSFLRENN VDLTDVKKSP DEDDGEHHFK VKRMPSKIKE VEEEPPNAKP KNHPELHTLT
401: RFHPKDKDMA EDNQDDDEEE PETPSEEGYE TAEETFIAEE EFAYPKSHLF DEDIEEYEKP VPKEKIMKRI DSHKGLKSYQ LAERLHSRWS TGAGPRISCM
501: RDYPSELQFR VLEQAQLSPR ASSSSNPSPF APVRSRGTSL GRSPFSQELE RL
001: METKTILRSI SFNDIDSDST ITESPEARKT LYNRSLSGKG TQRSRISPGD VENNFSIKPL TFMKEDDRYK MRIWKPVCEN EHAKEFLALL LGDGTYQAAL
101: KLQKVYRSFR TRRRLADCAV VVEQRWWKVL DFAELKRSSI SFFEIEKQET AVSRWSRART RAAKVGKGLS KDEKARKLAL QHWLEAIDPR HRYGHNLQFY
201: YHAWLHCDSK QPFFYWLDIG QGKELNHERC PRSKLYQQSI KYLGPTEREA YEVIIEDGKL MYKQSGIVLD TKEGPPDAKW IFVLSVSKIL YVGMKKKGNF
301: QHSSFLAGGA TLSAGRIVVD DGVLKAVWPH SGHYLPTEEN FQAFMSFLRE NNVDLANVKK NPDEEDGEAP AKVKRMPSRI KETEEEHCDF VDAETGFSPN
401: TKPNNHAELQ TLSRFHSKLS RLDEIPDEDD NMIEEEQDDE EEPETPSEQG YETAEETFIA EEEFTYPKSN LFDEDIEDYE KPVLKEKIMR RIDSHKGIKS
501: YQLAERLHSR WSTGAGPRIS CMRDYPSELQ FRVLEQAHLS PRASSNSSKI SPFAPVRTRG TSLGRSPLAE ELENL
101: KLQKVYRSFR TRRRLADCAV VVEQRWWKVL DFAELKRSSI SFFEIEKQET AVSRWSRART RAAKVGKGLS KDEKARKLAL QHWLEAIDPR HRYGHNLQFY
201: YHAWLHCDSK QPFFYWLDIG QGKELNHERC PRSKLYQQSI KYLGPTEREA YEVIIEDGKL MYKQSGIVLD TKEGPPDAKW IFVLSVSKIL YVGMKKKGNF
301: QHSSFLAGGA TLSAGRIVVD DGVLKAVWPH SGHYLPTEEN FQAFMSFLRE NNVDLANVKK NPDEEDGEAP AKVKRMPSRI KETEEEHCDF VDAETGFSPN
401: TKPNNHAELQ TLSRFHSKLS RLDEIPDEDD NMIEEEQDDE EEPETPSEQG YETAEETFIA EEEFTYPKSN LFDEDIEDYE KPVLKEKIMR RIDSHKGIKS
501: YQLAERLHSR WSTGAGPRIS CMRDYPSELQ FRVLEQAHLS PRASSNSSKI SPFAPVRTRG TSLGRSPLAE ELENL
Arabidopsis Description
IQM6IQ domain-containing protein IQM6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2G8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.