Factsheet for PGSC0003DMT400021529

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g078650.1.1	Tomato	nucleus	90.31	95.22
VIT_08s0007g07190.t01	Wine grape	cytosol	47.66	57.22
PGSC0003DMT400060938	Potato	nucleus, plastid	60.78	55.49
HORVU2Hr1G015200.2	Barley	cytosol	31.88	51.0
KRH71773	Soybean	nucleus	44.38	50.71
CDX88987	Canola	nucleus	43.59	50.54
CDY00568	Canola	nucleus	43.91	50.18
HORVU1Hr1G045060.3	Barley	nucleus	28.91	50.14
AT3G58480.1	Thale cress	nucleus	44.84	49.91
HORVU4Hr1G074540.1	Barley	cytosol	19.53	49.8
Bra014570.1-P	Field mustard	nucleus	43.75	49.73
GSMUA_Achr6P01520_001	Banana	cytosol	18.28	49.37
TraesCS5A01G375700.1	Wheat	cytosol	40.78	48.88
GSMUA_Achr4P06580_001	Banana	cytosol	41.25	48.8
KRH38004	Soybean	cytosol	45.31	48.74
TraesCS5B01G377900.1	Wheat	cytosol	40.94	48.7
HORVU2Hr1G074420.1	Barley	cytosol	11.25	48.65
GSMUA_Achr4P13570_001	Banana	cytosol	41.09	48.35
Zm00001d047402_P001	Maize	cytosol	40.47	48.14
PGSC0003DMT400080788	Potato	nucleus	40.78	47.89
GSMUA_Achr9P21650_001	Banana	plastid, vacuole	42.19	47.54
PGSC0003DMT400082749	Potato	cytosol	34.06	46.78
Os03t0374500-00	Rice	nucleus	41.88	46.45
EER92212	Sorghum	cytosol	41.56	46.34
HORVU5Hr1G093140.18	Barley	cytosol, nucleus	41.25	46.23
PGSC0003DMT400021177	Potato	cytosol, mitochondrion, nucleus, plastid	35.31	46.12
TraesCS2A01G154900.1	Wheat	cytosol	40.62	46.1
Os07t0633400-01	Rice	cytosol	42.03	45.98
TraesCS2D01G160200.1	Wheat	cytosol	40.94	45.88
TraesCS2B01G180000.1	Wheat	cytosol	40.62	45.45
HORVU2Hr1G028140.2	Barley	cytosol	40.16	45.33
HORVU5Hr1G023670.50	Barley	cytosol	17.19	44.53
HORVU7Hr1G052820.45	Barley	cytosol	17.19	44.53
GSMUA_Achr4P11190_001	Banana	cytosol	40.47	44.2
HORVU4Hr1G052500.37	Barley	cytosol, nucleus	16.88	43.72
HORVU2Hr1G028150.1	Barley	cytosol	40.16	43.49
TraesCS5D01G385200.2	Wheat	cytosol	37.66	43.27
TraesCS4D01G281600.1	Wheat	nucleus	40.16	41.92
TraesCS4A01G021000.1	Wheat	nucleus	39.84	41.8
Os10t0411500-01	Rice	plasma membrane	42.34	41.76
Os03t0167200-01	Rice	plasma membrane	39.69	41.64
HORVU4Hr1G074550.4	Barley	cytosol	39.53	41.34
EER97603	Sorghum	nucleus	40.78	41.23
GSMUA_Achr6P01560_001	Banana	mitochondrion	17.19	41.2
PGSC0003DMT400072375	Potato	cytosol	29.84	40.99
Zm00001d032981_P001	Maize	cytosol	41.88	40.85
Zm00001d027815_P002	Maize	nucleus	40.94	40.81
PGSC0003DMT400006372	Potato	endoplasmic reticulum, extracellular, golgi	19.22	40.2
HORVU3Hr1G010590.3	Barley	nucleus	18.75	40.13
KXG40105	Sorghum	cytosol	39.84	40.03
EER94258	Sorghum	cytosol	41.72	39.73
HORVU5Hr1G120690.3	Barley	nucleus	18.75	39.6
Zm00001d022245_P001	Maize	cytosol	40.16	38.88
PGSC0003DMT400022916	Potato	cytosol	31.25	38.46
TraesCS4B01G282600.2	Wheat	nucleus	40.0	38.27
GSMUA_Achr3P29200_001	Banana	cytosol	37.97	37.97
PGSC0003DMT400000881	Potato	cytosol	30.62	36.5
HORVU2Hr1G074410.1	Barley	cytosol, nucleus	7.97	34.93
GSMUA_Achr6P01510_001	Banana	nucleus	11.25	34.78
Zm00001d024699_P001	Maize	nucleus	16.56	33.54
HORVU5Hr1G110660.2	Barley	mitochondrion	5.62	29.03
TraesCS2B01G401000.1	Wheat	plastid	14.06	25.94

Protein Annotations

EnsemblPlants:PGSC0003DMT400021529	EnsemblPlantsGene:PGSC0003DMG401008350	PANTHER:PTHR31250	PANTHER:PTHR31250:SF4	PGSC:PGSC0003DMG401008350	SEG:seg
UniParc:UPI000295AB74	UniProt:M1AF92	MapMan:35.1	:	:	:

Description

Calmodulin binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG401008350]

Coordinates

chr10:+:59101643..59105550

Molecular Weight (calculated)

73630.6 Da

IEP (calculated)

9.321

GRAVY (calculated)

-0.643

Length

640 amino acids

Sequence
(BLAST)

001: MGITFSCPFA NFEDLDSRVE SYLVRTLSLG SDDMKNVLQP RNFNDQITRK SKILKSFGSG NMILEGTLTY KRREFEAKIA LRTLISDKEE KKINRSDNPW
101: NRAEVSPKLH SISDKDTRML PVEYGKHRDQ AAVKLQKTYK SFRTRRQLAD CAVLVEHRWW KLLDSVELKH SSISYFDTKK LQTAVSRWSR ALTRTAKVGK
201: GLSKDGKARK LALQHWLEAI DPRHRYGHNL RFYYNKWLQA DSKQPFFYWL DIGEGKEINL ERCARPKLQQ DCIKYLGPIE REAYEIVIEG GKFLYKQSRR
301: LLDTRGGPPE AKWIFVLSVS KILYVGMKKK GTFQHSSFLA GGAALSAGRL VAEDGIIKAV WPQSGHYLPT KENFEAFMLF LKQHHVDIAV VQKFTNYEED
401: APSIRKECRT SICKHLSVSD FSQFNKESIL KSSDTKRIDS TNKDCDDEDF SVPHFPSQSR GVRPKIAVEI PEKEGIFELF KETAQQVQPV ETPADGYETP
501: DEYLSDTEFS VSKKNLFDHE NEEEFKEPVP EEKIIKRIHS HIGMKSNHLA HQLSSCKWST GAGPRIGCMR DYPSELQFRV MEEVQLSPRT AFPASSKCAR
601: RYTPTIFSRE ANDQGKRPDF ELVVFCESDS PSVKREAVFG

Best Arabidopsis Sequence Match ( AT3G58480.1 )
(BLAST)

001: METKTILRSI SFNDIDSDST ITESPEARKT LYNRSLSGKG TQRSRISPGD VENNFSIKPL TFMKEDDRYK MRIWKPVCEN EHAKEFLALL LGDGTYQAAL
101: KLQKVYRSFR TRRRLADCAV VVEQRWWKVL DFAELKRSSI SFFEIEKQET AVSRWSRART RAAKVGKGLS KDEKARKLAL QHWLEAIDPR HRYGHNLQFY
201: YHAWLHCDSK QPFFYWLDIG QGKELNHERC PRSKLYQQSI KYLGPTEREA YEVIIEDGKL MYKQSGIVLD TKEGPPDAKW IFVLSVSKIL YVGMKKKGNF
301: QHSSFLAGGA TLSAGRIVVD DGVLKAVWPH SGHYLPTEEN FQAFMSFLRE NNVDLANVKK NPDEEDGEAP AKVKRMPSRI KETEEEHCDF VDAETGFSPN
401: TKPNNHAELQ TLSRFHSKLS RLDEIPDEDD NMIEEEQDDE EEPETPSEQG YETAEETFIA EEEFTYPKSN LFDEDIEDYE KPVLKEKIMR RIDSHKGIKS
501: YQLAERLHSR WSTGAGPRIS CMRDYPSELQ FRVLEQAHLS PRASSNSSKI SPFAPVRTRG TSLGRSPLAE ELENL

Arabidopsis Description

IQM6IQ domain-containing protein IQM6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2G8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.