Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G281600.1 | Wheat | nucleus | 93.77 | 93.31 |
| HORVU4Hr1G074550.4 | Barley | cytosol | 92.3 | 91.99 |
| TraesCS4B01G282600.2 | Wheat | nucleus | 92.95 | 84.75 |
| HORVU4Hr1G074540.1 | Barley | cytosol | 31.48 | 76.49 |
| Os03t0167200-01 | Rice | plasma membrane | 71.48 | 71.48 |
| KXG40105 | Sorghum | cytosol | 72.95 | 69.86 |
| Zm00001d027815_P002 | Maize | nucleus | 71.97 | 68.38 |
| TraesCS5A01G375700.1 | Wheat | cytosol | 47.87 | 54.68 |
| TraesCS2A01G154900.1 | Wheat | cytosol | 47.87 | 51.77 |
| VIT_08s0007g07190.t01 | Wine grape | cytosol | 44.92 | 51.41 |
| Bra021491.1-P | Field mustard | nucleus | 41.31 | 51.12 |
| Bra027414.1-P | Field mustard | nucleus | 44.1 | 46.7 |
| KRH71773 | Soybean | nucleus | 41.97 | 45.71 |
| Bra014570.1-P | Field mustard | nucleus | 41.48 | 44.94 |
| KRG97321 | Soybean | nucleus | 40.98 | 44.72 |
| TraesCS5A01G129600.1 | Wheat | cytosol | 33.77 | 44.69 |
| KRH38004 | Soybean | cytosol | 43.44 | 44.54 |
| Bra001512.1-P | Field mustard | cytosol | 38.52 | 44.42 |
| AT3G13600.1 | Thale cress | nucleus | 43.93 | 44.3 |
| AT3G58480.1 | Thale cress | nucleus | 41.64 | 44.17 |
| Solyc01g044420.2.1 | Tomato | nucleus | 41.64 | 44.1 |
| PGSC0003DMT400080788 | Potato | nucleus | 39.18 | 43.85 |
| TraesCS6A01G108900.1 | Wheat | cytosol | 34.75 | 43.71 |
| KRH58931 | Soybean | nucleus | 45.9 | 42.68 |
| KRH42833 | Soybean | cytosol | 45.9 | 42.36 |
| TraesCS1A01G125400.1 | Wheat | nucleus | 35.9 | 42.36 |
| Solyc10g080640.1.1 | Tomato | nucleus | 43.61 | 42.02 |
| VIT_06s0004g00690.t01 | Wine grape | nucleus | 45.25 | 41.19 |
| Solyc10g078650.1.1 | Tomato | nucleus | 40.49 | 40.69 |
| PGSC0003DMT400021529 | Potato | cytosol | 41.8 | 39.84 |
| Solyc01g005800.2.1 | Tomato | nucleus | 43.11 | 39.79 |
| TraesCS3A01G206400.1 | Wheat | plastid | 36.07 | 39.57 |
| TraesCS6A01G104600.1 | Wheat | nucleus | 16.23 | 36.4 |
| PGSC0003DMT400060938 | Potato | nucleus, plastid | 40.33 | 35.09 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G021000.1 | EnsemblPlantsGene:TraesCS4A01G021000 | PANTHER:PTHR31250 | PANTHER:PTHR31250:SF5 | SEG:seg | MapMan:35.1 |
Description
No Description!
Coordinates
chr4A:+:14261744..14265031
Molecular Weight (calculated)
67883.0 Da
IEP (calculated)
10.104
GRAVY (calculated)
-0.651
Length
610 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLSISYPPD DYLPADDDNS DRPFVRSLSF DNLSSLETPD SPPEMFDAVS SRGPAREGSL NARRKEGPPL HVNTTKPRLS PKPDKECCNH KHLSKYGADH
101: LPPNSPVVGM VSPQHQAAAI RVQKVYKSFR TRRQLADCAV LVEQRWWKLL DFALLKQSSV SFFEVEKPET ALTRWSRARI KAAKVGKGLS KDEKAQKLAL
201: QHWLEAIDPR HRYGHNLHYY YKSWLHCDSQ QPFFYWLDVG EGKEINLEDQ CPRWKLLHQC IRYLGPKERE FYEVMIENKM MMYKLSRKIV NTSEGPKDAK
301: WIFVLSTTKI LYIGTKSKGT FQHSSFLAGG ATSAAGRLVV ANGILKAVWP HSGHYRPTEA NFREFMKYLR KGNVDLTDVK LSPTEGEEDE WLRSSLSQMD
401: LTTEVSTPGK QGDTRAQPPR GDKKKIKPAV PAAPPSTSGE AVAGSPGMKR SSSGTRLQRK RPPRLTVSKN RLGKDAAEPD AGSFGDRLDF CKANLFTGRG
501: AEGGEGAEVP AVPQEMIMHR INSKMAHKSY QLGQQLSLRW TTGAGPRIGC VRDYPPELQF RSLEQVSLSP RAGAGPPRLG ATPRQRSPCT PSPLGAPVTP
601: AGPLLQHGAA
101: LPPNSPVVGM VSPQHQAAAI RVQKVYKSFR TRRQLADCAV LVEQRWWKLL DFALLKQSSV SFFEVEKPET ALTRWSRARI KAAKVGKGLS KDEKAQKLAL
201: QHWLEAIDPR HRYGHNLHYY YKSWLHCDSQ QPFFYWLDVG EGKEINLEDQ CPRWKLLHQC IRYLGPKERE FYEVMIENKM MMYKLSRKIV NTSEGPKDAK
301: WIFVLSTTKI LYIGTKSKGT FQHSSFLAGG ATSAAGRLVV ANGILKAVWP HSGHYRPTEA NFREFMKYLR KGNVDLTDVK LSPTEGEEDE WLRSSLSQMD
401: LTTEVSTPGK QGDTRAQPPR GDKKKIKPAV PAAPPSTSGE AVAGSPGMKR SSSGTRLQRK RPPRLTVSKN RLGKDAAEPD AGSFGDRLDF CKANLFTGRG
501: AEGGEGAEVP AVPQEMIMHR INSKMAHKSY QLGQQLSLRW TTGAGPRIGC VRDYPPELQF RSLEQVSLSP RAGAGPPRLG ATPRQRSPCT PSPLGAPVTP
601: AGPLLQHGAA
001: METKTILRSI SFNDIDSDST ITESPEARKT LYNRSLSGKG TQRSRISPGD VENNFSIKPL TFMKEDDRYK MRIWKPVCEN EHAKEFLALL LGDGTYQAAL
101: KLQKVYRSFR TRRRLADCAV VVEQRWWKVL DFAELKRSSI SFFEIEKQET AVSRWSRART RAAKVGKGLS KDEKARKLAL QHWLEAIDPR HRYGHNLQFY
201: YHAWLHCDSK QPFFYWLDIG QGKELNHERC PRSKLYQQSI KYLGPTEREA YEVIIEDGKL MYKQSGIVLD TKEGPPDAKW IFVLSVSKIL YVGMKKKGNF
301: QHSSFLAGGA TLSAGRIVVD DGVLKAVWPH SGHYLPTEEN FQAFMSFLRE NNVDLANVKK NPDEEDGEAP AKVKRMPSRI KETEEEHCDF VDAETGFSPN
401: TKPNNHAELQ TLSRFHSKLS RLDEIPDEDD NMIEEEQDDE EEPETPSEQG YETAEETFIA EEEFTYPKSN LFDEDIEDYE KPVLKEKIMR RIDSHKGIKS
501: YQLAERLHSR WSTGAGPRIS CMRDYPSELQ FRVLEQAHLS PRASSNSSKI SPFAPVRTRG TSLGRSPLAE ELENL
101: KLQKVYRSFR TRRRLADCAV VVEQRWWKVL DFAELKRSSI SFFEIEKQET AVSRWSRART RAAKVGKGLS KDEKARKLAL QHWLEAIDPR HRYGHNLQFY
201: YHAWLHCDSK QPFFYWLDIG QGKELNHERC PRSKLYQQSI KYLGPTEREA YEVIIEDGKL MYKQSGIVLD TKEGPPDAKW IFVLSVSKIL YVGMKKKGNF
301: QHSSFLAGGA TLSAGRIVVD DGVLKAVWPH SGHYLPTEEN FQAFMSFLRE NNVDLANVKK NPDEEDGEAP AKVKRMPSRI KETEEEHCDF VDAETGFSPN
401: TKPNNHAELQ TLSRFHSKLS RLDEIPDEDD NMIEEEQDDE EEPETPSEQG YETAEETFIA EEEFTYPKSN LFDEDIEDYE KPVLKEKIMR RIDSHKGIKS
501: YQLAERLHSR WSTGAGPRIS CMRDYPSELQ FRVLEQAHLS PRASSNSSKI SPFAPVRTRG TSLGRSPLAE ELENL
Arabidopsis Description
IQM6IQ domain-containing protein IQM6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2G8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.