Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G021000.1 | Wheat | nucleus | 93.31 | 93.77 |
| HORVU4Hr1G074550.4 | Barley | cytosol | 92.66 | 92.81 |
| TraesCS4B01G282600.2 | Wheat | nucleus | 94.94 | 87.0 |
| HORVU4Hr1G074540.1 | Barley | cytosol | 31.65 | 77.29 |
| Os03t0167200-01 | Rice | plasma membrane | 71.78 | 72.13 |
| KXG40105 | Sorghum | cytosol | 72.92 | 70.17 |
| Zm00001d027815_P002 | Maize | nucleus | 71.94 | 68.69 |
| VIT_08s0007g07190.t01 | Wine grape | cytosol | 45.02 | 51.78 |
| TraesCS2D01G160200.1 | Wheat | cytosol | 48.12 | 51.66 |
| Bra021491.1-P | Field mustard | nucleus | 40.78 | 50.71 |
| TraesCS5D01G385200.2 | Wheat | cytosol | 44.54 | 49.01 |
| Bra027414.1-P | Field mustard | nucleus | 43.39 | 46.18 |
| KRH71773 | Soybean | nucleus | 41.76 | 45.71 |
| Bra014570.1-P | Field mustard | nucleus | 41.6 | 45.29 |
| Bra001512.1-P | Field mustard | cytosol | 38.66 | 44.8 |
| KRG97321 | Soybean | nucleus | 40.62 | 44.54 |
| KRH38004 | Soybean | cytosol | 43.23 | 44.54 |
| AT3G58480.1 | Thale cress | nucleus | 41.76 | 44.52 |
| Solyc01g044420.2.1 | Tomato | nucleus | 41.76 | 44.44 |
| PGSC0003DMT400080788 | Potato | nucleus | 39.15 | 44.04 |
| AT3G13600.1 | Thale cress | nucleus | 43.39 | 43.97 |
| TraesCS5D01G137100.1 | Wheat | cytosol | 34.26 | 43.75 |
| TraesCS6D01G097300.1 | Wheat | cytosol | 34.42 | 43.59 |
| Solyc10g080640.1.1 | Tomato | nucleus | 43.88 | 42.5 |
| KRH58931 | Soybean | nucleus | 45.35 | 42.38 |
| KRH42833 | Soybean | cytosol | 45.35 | 42.06 |
| VIT_06s0004g00690.t01 | Wine grape | nucleus | 45.68 | 41.79 |
| TraesCS6D01G093400.1 | Wheat | cytosol | 32.63 | 41.67 |
| Solyc10g078650.1.1 | Tomato | nucleus | 40.46 | 40.86 |
| PGSC0003DMT400021529 | Potato | cytosol | 41.92 | 40.16 |
| TraesCS1D01G128400.2 | Wheat | nucleus | 36.38 | 40.04 |
| Solyc01g005800.2.1 | Tomato | nucleus | 42.9 | 39.79 |
| TraesCS3D01G209200.2 | Wheat | plastid | 35.24 | 39.13 |
| PGSC0003DMT400060938 | Potato | nucleus, plastid | 40.62 | 35.52 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G281600.1 | EnsemblPlantsGene:TraesCS4D01G281600 | PANTHER:PTHR31250 | PANTHER:PTHR31250:SF5 | SEG:seg | MapMan:35.1 |
Description
No Description!
Coordinates
chr4D:-:452795390..452798079
Molecular Weight (calculated)
68132.2 Da
IEP (calculated)
10.210
GRAVY (calculated)
-0.676
Length
613 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLSISYPPD DYSPADDDNS DRLFVRSLSL DNLGNLETPG SPPEMSDAVS SGKPARKGSL NARRKEGPPL HVDTTKPRVS PKPDKECSNH KHSHSLLKYG
101: ADYLPPNSPV VGMVSPQHQA AAVRVQKVYK SFRTRRQLAD CAVLVEQRWW KLLDFALLKQ SSVSFFEVEK PETALTRWSR ARIKAAKVGK GLSKDEKAQK
201: LALQHWLEAI DPRHRYGHNL HYYYKSWLHC DSQQPFFYWL DVGEGKEINL EDHCPRWKLL QQCIRYLGPK EREVYEVKIE NKMMMYKLSR KIVDTSEGPK
301: DAKWIFVLST TKILYIGTKS KGTFQHSSFL AGGATSAAGR LVVANGILKA VWPHSGHYRP TEANFREFVK YLRKRNVDLT DVKLSPTEGE EDEWLRSSLS
401: QMDLTTEIST PRKQGDTRAQ PPRGDKIKIK TAVPAAPPST SGEAGAGSPG MKRSSSGTRL QRKRPPRLTV SKNRLDKGAA EQDAGSFGDR LDFCKANLFT
501: GRAAEGGEGG EEPAVPQERI MHRINSKMAH KSYQLGQQLS LRWTTGAGPR IGCVRDYPPE LQFRSLEQVS LSPRAGAGPP RLGATARQKS PCTPSPLGAP
601: VTPAAPLLQH GAA
101: ADYLPPNSPV VGMVSPQHQA AAVRVQKVYK SFRTRRQLAD CAVLVEQRWW KLLDFALLKQ SSVSFFEVEK PETALTRWSR ARIKAAKVGK GLSKDEKAQK
201: LALQHWLEAI DPRHRYGHNL HYYYKSWLHC DSQQPFFYWL DVGEGKEINL EDHCPRWKLL QQCIRYLGPK EREVYEVKIE NKMMMYKLSR KIVDTSEGPK
301: DAKWIFVLST TKILYIGTKS KGTFQHSSFL AGGATSAAGR LVVANGILKA VWPHSGHYRP TEANFREFVK YLRKRNVDLT DVKLSPTEGE EDEWLRSSLS
401: QMDLTTEIST PRKQGDTRAQ PPRGDKIKIK TAVPAAPPST SGEAGAGSPG MKRSSSGTRL QRKRPPRLTV SKNRLDKGAA EQDAGSFGDR LDFCKANLFT
501: GRAAEGGEGG EEPAVPQERI MHRINSKMAH KSYQLGQQLS LRWTTGAGPR IGCVRDYPPE LQFRSLEQVS LSPRAGAGPP RLGATARQKS PCTPSPLGAP
601: VTPAAPLLQH GAA
001: METKTILRSI SFNDIDSDST ITESPEARKT LYNRSLSGKG TQRSRISPGD VENNFSIKPL TFMKEDDRYK MRIWKPVCEN EHAKEFLALL LGDGTYQAAL
101: KLQKVYRSFR TRRRLADCAV VVEQRWWKVL DFAELKRSSI SFFEIEKQET AVSRWSRART RAAKVGKGLS KDEKARKLAL QHWLEAIDPR HRYGHNLQFY
201: YHAWLHCDSK QPFFYWLDIG QGKELNHERC PRSKLYQQSI KYLGPTEREA YEVIIEDGKL MYKQSGIVLD TKEGPPDAKW IFVLSVSKIL YVGMKKKGNF
301: QHSSFLAGGA TLSAGRIVVD DGVLKAVWPH SGHYLPTEEN FQAFMSFLRE NNVDLANVKK NPDEEDGEAP AKVKRMPSRI KETEEEHCDF VDAETGFSPN
401: TKPNNHAELQ TLSRFHSKLS RLDEIPDEDD NMIEEEQDDE EEPETPSEQG YETAEETFIA EEEFTYPKSN LFDEDIEDYE KPVLKEKIMR RIDSHKGIKS
501: YQLAERLHSR WSTGAGPRIS CMRDYPSELQ FRVLEQAHLS PRASSNSSKI SPFAPVRTRG TSLGRSPLAE ELENL
101: KLQKVYRSFR TRRRLADCAV VVEQRWWKVL DFAELKRSSI SFFEIEKQET AVSRWSRART RAAKVGKGLS KDEKARKLAL QHWLEAIDPR HRYGHNLQFY
201: YHAWLHCDSK QPFFYWLDIG QGKELNHERC PRSKLYQQSI KYLGPTEREA YEVIIEDGKL MYKQSGIVLD TKEGPPDAKW IFVLSVSKIL YVGMKKKGNF
301: QHSSFLAGGA TLSAGRIVVD DGVLKAVWPH SGHYLPTEEN FQAFMSFLRE NNVDLANVKK NPDEEDGEAP AKVKRMPSRI KETEEEHCDF VDAETGFSPN
401: TKPNNHAELQ TLSRFHSKLS RLDEIPDEDD NMIEEEQDDE EEPETPSEQG YETAEETFIA EEEFTYPKSN LFDEDIEDYE KPVLKEKIMR RIDSHKGIKS
501: YQLAERLHSR WSTGAGPRIS CMRDYPSELQ FRVLEQAHLS PRASSNSSKI SPFAPVRTRG TSLGRSPLAE ELENL
Arabidopsis Description
IQM6IQ domain-containing protein IQM6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2G8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.