Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G097300.1 | Wheat | cytosol | 95.67 | 95.87 |
| HORVU6Hr1G019510.4 | Barley | cytosol | 94.43 | 95.82 |
| TraesCS6B01G137500.1 | Wheat | cytosol | 94.85 | 95.24 |
| TraesCS5A01G129600.1 | Wheat | cytosol | 85.36 | 89.8 |
| Os12t0149900-01 | Rice | cytosol | 79.59 | 80.92 |
| EES09264 | Sorghum | cytosol | 75.26 | 80.22 |
| EES16640 | Sorghum | cytosol | 73.2 | 78.54 |
| Zm00001d004916_P001 | Maize | cytosol | 58.97 | 77.93 |
| TraesCS6A01G104600.1 | Wheat | nucleus | 43.51 | 77.57 |
| Zm00001d052525_P001 | Maize | cytosol | 73.2 | 75.85 |
| GSMUA_Achr3P03060_001 | Banana | cytosol | 46.19 | 58.64 |
| CDY13342 | Canola | cytosol | 54.64 | 58.11 |
| CDX67541 | Canola | cytosol | 54.64 | 58.11 |
| CDY13341 | Canola | cytosol | 21.65 | 58.01 |
| Bra028537.1-P | Field mustard | cytosol | 54.43 | 57.89 |
| AT3G52870.1 | Thale cress | cytosol | 53.61 | 57.02 |
| KRH30882 | Soybean | cytosol | 55.26 | 56.54 |
| CDX95381 | Canola | cytosol | 52.78 | 56.14 |
| Bra019642.1-P | Field mustard | cytosol | 52.58 | 55.92 |
| CDX76252 | Canola | cytosol | 52.58 | 55.92 |
| Solyc10g085610.1.1 | Tomato | cytosol | 50.1 | 55.86 |
| VIT_13s0074g00760.t01 | Wine grape | nucleus | 50.93 | 55.26 |
| PGSC0003DMT400072375 | Potato | cytosol | 52.99 | 55.15 |
| KRG96176 | Soybean | plastid | 52.99 | 55.03 |
| Solyc10g083360.1.1 | Tomato | cytosol | 52.78 | 54.94 |
| KRH32680 | Soybean | cytosol | 54.23 | 54.45 |
| GSMUA_Achr6P13300_001 | Banana | cytosol | 54.02 | 52.93 |
| VIT_08s0007g03630.t01 | Wine grape | cytosol | 49.28 | 51.07 |
| PGSC0003DMT400022916 | Potato | cytosol | 53.61 | 50.0 |
| Solyc09g009770.2.1 | Tomato | nucleus | 53.61 | 49.52 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plastid | 52.37 | 45.36 |
| KRH67885 | Soybean | cytosol | 33.2 | 45.22 |
| TraesCS5A01G375700.1 | Wheat | cytosol | 44.74 | 40.64 |
| TraesCS1A01G125400.1 | Wheat | nucleus | 40.41 | 37.91 |
| TraesCS2A01G154900.1 | Wheat | cytosol | 43.09 | 37.06 |
| TraesCS3A01G206400.1 | Wheat | plastid | 40.0 | 34.89 |
| TraesCS4A01G021000.1 | Wheat | nucleus | 43.71 | 34.75 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G108900.1 | EnsemblPlantsGene:TraesCS6A01G108900 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR000048 |
| InterPro:IQ_motif_EF-hand-BS | PANTHER:PTHR31250 | PANTHER:PTHR31250:SF10 | PFscan:PS50096 | SEG:seg | MapMan:35.1 |
Description
No Description!
Coordinates
chr6A:+:77780314..77783836
Molecular Weight (calculated)
53613.1 Da
IEP (calculated)
8.610
GRAVY (calculated)
-0.574
Length
485 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVETAMPPP AAGPDRVETA SREPSRTGAS SSPSPATGGE ANGAATKVQK VYRSYRTRRK LADSAVVVEE LWWQALDFAR LNHSTVSFYD DPEPETAASR
101: WNRVSLNASK VGQGLSKDAK ALKLAFQHWI EAIDPRHRYG HNLHFYYDVW CQTQAGQPFF YWLDIGEGKD VDLPECPRAR LKKQCIRYLG PQEREFYEYI
201: IKEGKIIHQI SGEALDTSQG PKGTKWIFVM STAKKLYAGQ KERGVFQHSS FLAGGATIAA GRFTAENGVI KSIWAYSGHY KPSAENLGNF MSFLEENGVD
301: LKEVEVRSST KEDYYEDPVL NSKQNPAAAA IMPSNPPQLI LPSNMVEEDK ASGPSSQTEA DEVNDNLRVE KARPAYQRTL SGGLQSPRDV GVSQDAILER
401: VNSKSKSKSY QLGHRLSLKW STGNGPRIGC VRGYPIELRM QALEMVQLSP RASTPPASWR VPSCLSPTSP TSPLVAMQAS LPQPS
101: WNRVSLNASK VGQGLSKDAK ALKLAFQHWI EAIDPRHRYG HNLHFYYDVW CQTQAGQPFF YWLDIGEGKD VDLPECPRAR LKKQCIRYLG PQEREFYEYI
201: IKEGKIIHQI SGEALDTSQG PKGTKWIFVM STAKKLYAGQ KERGVFQHSS FLAGGATIAA GRFTAENGVI KSIWAYSGHY KPSAENLGNF MSFLEENGVD
301: LKEVEVRSST KEDYYEDPVL NSKQNPAAAA IMPSNPPQLI LPSNMVEEDK ASGPSSQTEA DEVNDNLRVE KARPAYQRTL SGGLQSPRDV GVSQDAILER
401: VNSKSKSKSY QLGHRLSLKW STGNGPRIGC VRGYPIELRM QALEMVQLSP RASTPPASWR VPSCLSPTSP TSPLVAMQAS LPQPS
001: MQVVSSFDFQ SSPFSHGAGE ILISPVDHRE LSSHGDALEG ACDDSTRLAA VKVQKVYRSY RTRRRLADSV VVAEELWWQA MDYARLNHST ISFFDYSRPE
101: TAVSRWNRVS LNASKVGKGL SIVDKAQKLA FQHWIEAIDP RHRYGHNLHK YYEEWCKADA GQPFFYWLDV GGGIDLDLNE CPRSKLKQQC IRYLGPQERE
201: EYEYVIIEGK IVHKLTGKFL HTMHGSEGTK WIFVMSTFKK LYAGLKKKGR FHHSSFLAGG ATLAAGRVIV DNGVLKTISA YSGHYRPSDD SLDTFLGFLR
301: ENAVNLDNVE VHKASEDSDS YDDYVKSNGG SEPEPLKKED TTFQAETETD ENGNGTVGTL EEAKRSSYQR TLSGGLGSPK ANVPQKSMLL RINSKKQSRS
401: LQLGHQLSLK WSTGVGPRIG CAADYPVQLR TQALEFVNLS PKYRSSRLSP TGKLDV
101: TAVSRWNRVS LNASKVGKGL SIVDKAQKLA FQHWIEAIDP RHRYGHNLHK YYEEWCKADA GQPFFYWLDV GGGIDLDLNE CPRSKLKQQC IRYLGPQERE
201: EYEYVIIEGK IVHKLTGKFL HTMHGSEGTK WIFVMSTFKK LYAGLKKKGR FHHSSFLAGG ATLAAGRVIV DNGVLKTISA YSGHYRPSDD SLDTFLGFLR
301: ENAVNLDNVE VHKASEDSDS YDDYVKSNGG SEPEPLKKED TTFQAETETD ENGNGTVGTL EEAKRSSYQR TLSGGLGSPK ANVPQKSMLL RINSKKQSRS
401: LQLGHQLSLK WSTGVGPRIG CAADYPVQLR TQALEFVNLS PKYRSSRLSP TGKLDV
Arabidopsis Description
IQM3IQ domain-containing protein IQM3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFA4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.