Factsheet for VIT_13s0074g00760.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P03060_001	Banana	cytosol	48.32	56.54
EES09264	Sorghum	cytosol	57.27	56.26
EES16640	Sorghum	cytosol	56.15	55.53
VIT_08s0007g03630.t01	Wine grape	cytosol	57.49	54.91
Zm00001d052525_P001	Maize	cytosol	56.6	54.06
Zm00001d004916_P001	Maize	cytosol	44.07	53.68
TraesCS5A01G129600.1	Wheat	cytosol	54.14	52.49
HORVU6Hr1G019510.4	Barley	cytosol	55.7	52.09
Zm00001d035377_P001	Maize	cytosol	50.78	52.06
GSMUA_Achr6P13300_001	Banana	cytosol	57.49	51.92
TraesCS6D01G097300.1	Wheat	cytosol	55.93	51.65
TraesCS6B01G137500.1	Wheat	cytosol	55.7	51.55
TraesCS5B01G128200.1	Wheat	cytosol	55.26	51.46
TraesCS5D01G137100.1	Wheat	cytosol	55.03	51.25
Os12t0149900-01	Rice	cytosol	54.59	51.15
HORVU5Hr1G041930.15	Barley	cytosol	55.26	51.14
EES09263	Sorghum	cytosol	51.9	51.1
TraesCS6A01G108900.1	Wheat	cytosol	55.26	50.93
Os11t0151002-00	Rice	cytosol	53.91	50.84
TraesCS6D01G093400.1	Wheat	cytosol	54.14	50.42
TraesCS6B01G133900.1	Wheat	cytosol	53.02	49.69
VIT_09s0002g04560.t01	Wine grape	cytosol	34.9	49.37
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plastid	55.93	44.64
TraesCS6A01G104600.1	Wheat	nucleus	25.95	42.65
VIT_11s0016g01970.t01	Wine grape	cytosol	44.52	37.2
VIT_08s0007g07190.t01	Wine grape	cytosol	43.85	36.77
VIT_04s0008g01070.t01	Wine grape	cytosol, extracellular, nucleus	43.18	35.74
VIT_06s0004g00690.t01	Wine grape	nucleus	47.87	31.94
VIT_09s0002g01680.t01	Wine grape	plastid	43.62	19.35

Protein Annotations

ArrayExpress:VIT_13s0074g00760	EMBL:FN596753	EnsemblPlants:VIT_13s0074g00760.t01	EnsemblPlantsGene:VIT_13s0074g00760	EntrezGene:100262617	EntrezGene:LOC100262617
PANTHER:PTHR31250	PANTHER:PTHR31250:SF12	ProteinID:CBI40249	ProteinID:CBI40249.3	RefSeq:XP_002264646	RefSeq:XP_002264646.1
SEG:seg	UniParc:UPI00015CC24E	UniProt:D7UBY4	wikigene:100262617	wikigene:LOC100262617	MapMan:35.1

Description

No Description!

Coordinates

chr13:+:9138247..9142644

Molecular Weight (calculated)

50191.6 Da

IEP (calculated)

9.451

GRAVY (calculated)

-0.564

Length

447 amino acids

Sequence
(BLAST)

001: MELQDQPHLS DYDTTAPTSH DHGSTTSSTA ALKLQKVYKS YRTRRKLADS AVVVEELWWQ ALDFARLNHS TISFFDYVKN ETAASRWSRI RLNASRVGKG
101: LSKDAMAQKL AFQHWIEAID PRHRYGHNLN LYYEEWCKGD AGQPFFYWLD VGDGKEVELK QCPRSRLRRE CIRYLGPQER EHYEYIIVEG TIVHKLSGDL
201: LDTNGDLEGS KWIFVMSTSK RLYAGQKRKG LFHHSSFLAG GATLAAGRLM AEGGKLRSVS AYSGHYRPTD GNLSSFLVFL KEHGVNLDGV QVLSPTEDLG
301: GDETSKTVEE LSKTGLSADA ELPKLQAPSD EKSKASEPSK FAQIVRISSY KRSLSGNLQS PRMRVPKKDI LQRMKSKKED SYQLGDQLSL KWSTGAGPRI
401: GCVADYPLKL RVQAFEMVDL TPKDPSRQLA SKLVDNLTSL GSSCKLM

Best Arabidopsis Sequence Match ( AT3G52870.1 )
(BLAST)

001: MQVVSSFDFQ SSPFSHGAGE ILISPVDHRE LSSHGDALEG ACDDSTRLAA VKVQKVYRSY RTRRRLADSV VVAEELWWQA MDYARLNHST ISFFDYSRPE
101: TAVSRWNRVS LNASKVGKGL SIVDKAQKLA FQHWIEAIDP RHRYGHNLHK YYEEWCKADA GQPFFYWLDV GGGIDLDLNE CPRSKLKQQC IRYLGPQERE
201: EYEYVIIEGK IVHKLTGKFL HTMHGSEGTK WIFVMSTFKK LYAGLKKKGR FHHSSFLAGG ATLAAGRVIV DNGVLKTISA YSGHYRPSDD SLDTFLGFLR
301: ENAVNLDNVE VHKASEDSDS YDDYVKSNGG SEPEPLKKED TTFQAETETD ENGNGTVGTL EEAKRSSYQR TLSGGLGSPK ANVPQKSMLL RINSKKQSRS
401: LQLGHQLSLK WSTGVGPRIG CAADYPVQLR TQALEFVNLS PKYRSSRLSP TGKLDV

Arabidopsis Description

IQM3IQ domain-containing protein IQM3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.