Factsheet for HORVU6Hr1G019510.4

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G108900.1	Wheat	cytosol	95.82	94.43
TraesCS6B01G137500.1	Wheat	cytosol	94.77	93.79
TraesCS6D01G097300.1	Wheat	cytosol	94.56	93.39
HORVU5Hr1G041930.15	Barley	cytosol	91.0	90.06
Os12t0149900-01	Rice	cytosol	80.54	80.71
EES09264	Sorghum	cytosol	76.36	80.22
EES16640	Sorghum	cytosol	73.64	77.88
Zm00001d004916_P001	Maize	cytosol	59.2	77.11
Zm00001d052525_P001	Maize	cytosol	74.27	75.85
GSMUA_Achr3P03060_001	Banana	cytosol	47.07	58.9
CDY13342	Canola	cytosol	55.65	58.33
CDX67541	Canola	cytosol	55.65	58.33
Bra028537.1-P	Field mustard	cytosol	55.44	58.11
CDY13341	Canola	cytosol	21.76	57.46
AT3G52870.1	Thale cress	cytosol	54.39	57.02
KRH30882	Soybean	cytosol	56.49	56.96
Solyc10g085610.1.1	Tomato	cytosol	51.26	56.32
CDX95381	Canola	cytosol	53.56	56.14
Bra019642.1-P	Field mustard	cytosol	53.35	55.92
CDX76252	Canola	cytosol	53.35	55.92
VIT_13s0074g00760.t01	Wine grape	nucleus	52.09	55.7
Solyc10g083360.1.1	Tomato	cytosol	53.97	55.36
PGSC0003DMT400072375	Potato	cytosol	53.97	55.36
KRG96176	Soybean	plastid	53.97	55.25
KRH32680	Soybean	cytosol	55.44	54.87
GSMUA_Achr6P13300_001	Banana	cytosol	55.02	53.13
VIT_08s0007g03630.t01	Wine grape	cytosol	50.42	51.5
PGSC0003DMT400022916	Potato	cytosol	54.39	50.0
Solyc09g009770.2.1	Tomato	nucleus	54.18	49.33
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plastid	53.56	45.71
KRH67885	Soybean	cytosol	33.68	45.22
HORVU1Hr1G045060.3	Barley	nucleus	33.89	43.9
HORVU4Hr1G074540.1	Barley	cytosol	23.01	43.82
HORVU2Hr1G074420.1	Barley	cytosol	12.97	41.89
HORVU2Hr1G015200.2	Barley	cytosol	34.31	41.0
HORVU5Hr1G093140.18	Barley	cytosol, nucleus	46.03	38.53
HORVU5Hr1G023670.50	Barley	cytosol	19.87	38.46
HORVU7Hr1G052820.45	Barley	cytosol	19.87	38.46
HORVU6Hr1G066990.1	Barley	mitochondrion	12.34	38.31
HORVU4Hr1G052500.37	Barley	cytosol, nucleus	19.67	38.06
HORVU3Hr1G010590.3	Barley	nucleus	23.22	37.12
HORVU5Hr1G120690.3	Barley	nucleus	23.43	36.96
HORVU2Hr1G028140.2	Barley	cytosol	43.72	36.86
HORVU2Hr1G028150.1	Barley	cytosol	43.72	35.36
HORVU3Hr1G049640.1	Barley	plastid	40.59	35.21
HORVU2Hr1G074410.1	Barley	cytosol, nucleus	10.67	34.93
HORVU4Hr1G074550.4	Barley	cytosol	44.56	34.8
HORVU1Hr1G028900.11	Barley	cytosol, mitochondrion, nucleus	40.59	31.86
HORVU5Hr1G110660.2	Barley	mitochondrion	8.16	31.45

Protein Annotations

EMBL:AK373469	EnsemblPlants:HORVU6Hr1G019510.4	EnsemblPlantsGene:HORVU6Hr1G019510	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR31250	PANTHER:PTHR31250:SF10	PFscan:PS50096	SEG:seg
UniParc:UPI0002008512	UniProt:F2EBE4	MapMan:35.1	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2EBE4]

Coordinates

chrchr6H:-:53102879..53106956

Molecular Weight (calculated)

52868.2 Da

IEP (calculated)

8.408

GRAVY (calculated)

-0.579

Length

478 amino acids

Sequence
(BLAST)

001: MEVETAMPPP AAAASREPSH TEELSSSPSP ATGGGANGAA TKVQKVYRSY RTRRKLADSA VVVEELWWQA LDFARLNHST VSFYDDPEPE TAASRWNRVS
101: LNASKVGQGL SKDAKALKLA FQHWIEAIDP RHRYGHNLHF YYDVWCQTQA GQPFFYWLDI GEGKDVDLLE CPRARLKKQC IRYLGPQERE YYEYIIKEGK
201: IIHNISGEAL DTSQGPKGTK WIFVMSTAKK LYAGQKERGV FQHSSFLAGG ATIAAGRFTA ENGVIKSIWA YSGHYKPSAE NLSNFMSFLE ENGVDLKEVE
301: VRSSTKEDYY EDPSLNSKQN PAAAIMPSNP PQLILPSNMV EEGKASGPSS QTEADEGDNL RMEKARPAYQ RTLSGGLQSP RDAGVSQDAI LERVNSKSKS
401: KSYQLGHRLS LKWSTGNGPR IGCVKDYPIE LRMQALEMVQ LSPRASTPPA SWRVSSCLSP TSPTSPLVTI QASLPQPS

Best Arabidopsis Sequence Match ( AT3G52870.1 )
(BLAST)

001: MQVVSSFDFQ SSPFSHGAGE ILISPVDHRE LSSHGDALEG ACDDSTRLAA VKVQKVYRSY RTRRRLADSV VVAEELWWQA MDYARLNHST ISFFDYSRPE
101: TAVSRWNRVS LNASKVGKGL SIVDKAQKLA FQHWIEAIDP RHRYGHNLHK YYEEWCKADA GQPFFYWLDV GGGIDLDLNE CPRSKLKQQC IRYLGPQERE
201: EYEYVIIEGK IVHKLTGKFL HTMHGSEGTK WIFVMSTFKK LYAGLKKKGR FHHSSFLAGG ATLAAGRVIV DNGVLKTISA YSGHYRPSDD SLDTFLGFLR
301: ENAVNLDNVE VHKASEDSDS YDDYVKSNGG SEPEPLKKED TTFQAETETD ENGNGTVGTL EEAKRSSYQR TLSGGLGSPK ANVPQKSMLL RINSKKQSRS
401: LQLGHQLSLK WSTGVGPRIG CAADYPVQLR TQALEFVNLS PKYRSSRLSP TGKLDV

Arabidopsis Description

IQM3IQ domain-containing protein IQM3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.