Factsheet for VIT_08s0007g03630.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072375	Potato	cytosol	58.55	58.8
Solyc10g085610.1.1	Tomato	cytosol	54.49	58.62
Solyc10g083360.1.1	Tomato	cytosol	58.33	58.58
Bra019642.1-P	Field mustard	cytosol	56.62	58.11
CDY13342	Canola	cytosol	56.62	58.11
Bra028537.1-P	Field mustard	cytosol	56.62	58.11
CDX67541	Canola	cytosol	56.62	58.11
CDX76252	Canola	cytosol	56.41	57.89
CDX95381	Canola	cytosol	56.2	57.68
AT3G52870.1	Thale cress	cytosol	56.2	57.68
VIT_13s0074g00760.t01	Wine grape	nucleus	54.91	57.49
CDY13341	Canola	cytosol	22.22	57.46
KRG96176	Soybean	plastid	56.41	56.53
KRH30882	Soybean	cytosol	56.84	56.12
KRH32680	Soybean	cytosol	57.27	55.49
GSMUA_Achr3P03060_001	Banana	cytosol	45.09	55.24
Zm00001d035377_P001	Maize	cytosol	48.93	52.52
EES09264	Sorghum	cytosol	50.64	52.09
TraesCS5A01G129600.1	Wheat	cytosol	50.64	51.41
Os12t0149900-01	Rice	cytosol	52.35	51.36
EES09263	Sorghum	cytosol	49.79	51.32
PGSC0003DMT400022916	Potato	cytosol	56.84	51.15
HORVU6Hr1G019510.4	Barley	cytosol	51.5	50.42
GSMUA_Achr6P13300_001	Banana	cytosol	52.99	50.1
EES16640	Sorghum	cytosol	48.29	50.0
Zm00001d004916_P001	Maize	cytosol	39.1	49.86
Zm00001d052525_P001	Maize	cytosol	49.79	49.79
Solyc09g009770.2.1	Tomato	nucleus	55.77	49.71
TraesCS6D01G097300.1	Wheat	cytosol	51.28	49.59
TraesCS5D01G137100.1	Wheat	cytosol	50.85	49.58
TraesCS6B01G137500.1	Wheat	cytosol	51.07	49.48
TraesCS5B01G128200.1	Wheat	cytosol	50.64	49.38
TraesCS6A01G108900.1	Wheat	cytosol	51.07	49.28
TraesCS6D01G093400.1	Wheat	cytosol	50.43	49.17
Os11t0151002-00	Rice	cytosol	49.57	48.95
HORVU5Hr1G041930.15	Barley	cytosol	50.43	48.86
TraesCS6B01G133900.1	Wheat	cytosol	49.15	48.22
VIT_09s0002g04560.t01	Wine grape	cytosol	31.84	47.15
KRH67885	Soybean	cytosol	33.76	44.38
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plastid	51.5	43.04
TraesCS6A01G104600.1	Wheat	nucleus	24.15	41.54
VIT_08s0007g07190.t01	Wine grape	cytosol	44.23	38.84
VIT_11s0016g01970.t01	Wine grape	cytosol	41.67	36.45
VIT_04s0008g01070.t01	Wine grape	cytosol, extracellular, nucleus	40.6	35.19
VIT_06s0004g00690.t01	Wine grape	nucleus	45.73	31.94
VIT_09s0002g01680.t01	Wine grape	plastid	41.88	19.44

Protein Annotations

EntrezGene:100240971	wikigene:100240971	MapMan:35.1	ProteinID:CCB55415	ProteinID:CCB55415.1	UniProt:F6HKJ3
EMBL:FN595991	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS
EntrezGene:LOC100240971	wikigene:LOC100240971	PFscan:PS50096	PANTHER:PTHR31250	PANTHER:PTHR31250:SF10	UniParc:UPI00015CA1CD
ArrayExpress:VIT_08s0007g03630	EnsemblPlantsGene:VIT_08s0007g03630	EnsemblPlants:VIT_08s0007g03630.t01	RefSeq:XP_002277042	RefSeq:XP_002277042.1	SEG:seg

Description

No Description!

Coordinates

chr8:+:17571848..17575462

Molecular Weight (calculated)

52208.9 Da

IEP (calculated)

6.369

GRAVY (calculated)

-0.628

Length

468 amino acids

Sequence
(BLAST)

001: MGDDSLEPYA AHECDTFEVS DSPSSDAPNT AYSKSLDINS KDDQLHATDD QDCPSFEQVL VSNLDADLPA AEESSGVKAP GSLISVEKAA VMLQKVYRSY
101: RTRRRLADSA IVAEELWWQA IDHARLNHST ISFFHFSKTE TMESRWGRIS LNASKVGKGL CEEAKAQKLA FQHWIEAIDP RHRYGHNLHM YHEQWYKADA
201: GQPFFYWLDI GDGKEVDLKE CPRSKLQREC IKYLGPKGRE HYEYILEEGK IVHKQTGDLL DTSNGLQGAK WIFVMSTSKK LYAGEKKKGA FHHSSFLAGG
301: ATLSAGKLMA GHGILKFISA YSGHYRPTDG CLENFLSFLR ENGVNLDEVQ VRTANEDYEH YDTSKSNGSN GSESTEETKT ETKGNYQRTL SGGLRNGTAE
401: VAKKAILQRI DSKKAVSSYQ LGRQLSLNWT TGAGPRIGCI ADYPVELREQ ALEFVNFPPS EPPTPTVS

Best Arabidopsis Sequence Match ( AT3G52870.1 )
(BLAST)

001: MQVVSSFDFQ SSPFSHGAGE ILISPVDHRE LSSHGDALEG ACDDSTRLAA VKVQKVYRSY RTRRRLADSV VVAEELWWQA MDYARLNHST ISFFDYSRPE
101: TAVSRWNRVS LNASKVGKGL SIVDKAQKLA FQHWIEAIDP RHRYGHNLHK YYEEWCKADA GQPFFYWLDV GGGIDLDLNE CPRSKLKQQC IRYLGPQERE
201: EYEYVIIEGK IVHKLTGKFL HTMHGSEGTK WIFVMSTFKK LYAGLKKKGR FHHSSFLAGG ATLAAGRVIV DNGVLKTISA YSGHYRPSDD SLDTFLGFLR
301: ENAVNLDNVE VHKASEDSDS YDDYVKSNGG SEPEPLKKED TTFQAETETD ENGNGTVGTL EEAKRSSYQR TLSGGLGSPK ANVPQKSMLL RINSKKQSRS
401: LQLGHQLSLK WSTGVGPRIG CAADYPVQLR TQALEFVNLS PKYRSSRLSP TGKLDV

Arabidopsis Description

IQM3IQ domain-containing protein IQM3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.