CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30882	Soybean	cytosol	71.95	70.89
KRH32680	Soybean	cytosol	73.02	70.6
PGSC0003DMT400072375	Potato	cytosol	61.67	61.8
Solyc10g083360.1.1	Tomato	cytosol	61.03	61.16
Bra028537.1-P	Field mustard	cytosol	59.1	60.53
CDX67541	Canola	cytosol	59.1	60.53
CDY13342	Canola	cytosol	58.89	60.31
AT3G52870.1	Thale cress	cytosol	58.89	60.31
Solyc10g085610.1.1	Tomato	cytosol	56.1	60.23
KRH67885	Soybean	cytosol	45.82	60.11
CDX76252	Canola	cytosol	58.24	59.65
CDX95381	Canola	cytosol	58.24	59.65
Bra019642.1-P	Field mustard	cytosol	58.03	59.43
CDY13341	Canola	cytosol	22.06	56.91
EES09264	Sorghum	cytosol	55.25	56.7
VIT_08s0007g03630.t01	Wine grape	cytosol	56.53	56.41
GSMUA_Achr3P03060_001	Banana	cytosol	45.61	55.76
Zm00001d052525_P001	Maize	cytosol	54.82	54.7
EES16640	Sorghum	cytosol	52.89	54.65
TraesCS5D01G137100.1	Wheat	cytosol	56.1	54.58
TraesCS5B01G128200.1	Wheat	cytosol	55.89	54.38
PGSC0003DMT400022916	Potato	cytosol	60.17	54.04
TraesCS5A01G129600.1	Wheat	cytosol	53.32	54.01
HORVU6Hr1G019510.4	Barley	cytosol	55.25	53.97
Solyc09g009770.2.1	Tomato	nucleus	60.6	53.9
HORVU5Hr1G041930.15	Barley	cytosol	55.46	53.62
TraesCS6D01G097300.1	Wheat	cytosol	55.46	53.51
Os12t0149900-01	Rice	cytosol	54.6	53.46
TraesCS6B01G137500.1	Wheat	cytosol	55.03	53.21
TraesCS6A01G108900.1	Wheat	cytosol	55.03	52.99
Os11t0151002-00	Rice	cytosol	53.75	52.95
Zm00001d004916_P001	Maize	cytosol	41.11	52.32
TraesCS6D01G093400.1	Wheat	cytosol	53.75	52.29
Zm00001d035377_P001	Maize	cytosol	47.97	51.38
TraesCS6B01G133900.1	Wheat	cytosol	52.03	50.94
GSMUA_Achr6P13300_001	Banana	cytosol	53.96	50.91
EES09263	Sorghum	cytosol	48.39	49.78
TraesCS6A01G104600.1	Wheat	nucleus	27.41	47.06
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plastid	54.18	45.18
KRH19209	Soybean	cytosol	23.13	39.85
KRH44122	Soybean	nucleus	39.83	37.2
KRH12419	Soybean	cytosol, plastid	41.97	37.19
KRH47098	Soybean	nucleus	39.61	37.07
KRH71773	Soybean	nucleus	44.33	36.96
KRH37419	Soybean	cytosol, extracellular, nucleus, plastid	41.76	36.93
KRG97321	Soybean	nucleus	44.11	36.85
KRH02687	Soybean	plastid	41.76	36.79
KRH23287	Soybean	cytosol	39.83	36.61
KRH10031	Soybean	cytosol	35.97	35.67
KRH38004	Soybean	cytosol	44.33	34.79
KRH58931	Soybean	nucleus	46.47	33.08
KRH42833	Soybean	cytosol	46.25	32.68

Protein Annotations

EMBL:ACUP02012146	EnsemblPlants:KRG96176	EnsemblPlantsGene:GLYMA_19G193300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR31250	PANTHER:PTHR31250:SF23	PFscan:PS50096	ProteinID:KRG96176
ProteinID:KRG96176.1	SEG:seg	UniParc:UPI000296EA80	UniProt:K7MZ78	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr19:+:45103408..45106702

Molecular Weight (calculated)

52291.8 Da

IEP (calculated)

9.161

GRAVY (calculated)

-0.527

Length

467 amino acids

Sequence
(BLAST)

001: MSPTSYSHLF LSMEVQTHSL SPTFHFHLLS QSTTDTNQPS LGHATAALKL QKVYRSYRTR RRLADSAVVA EELWWQAIDY VRLNHSTISF FNLPETAASR
101: WSRVKLNAAK VGKGLSKDAK AQKLAFQHWI EAIDPRHRYG HNLQYYYKEW CKTDAGQPFF YWLDLGNGKN LDLEQCSRSK LQKQCIKYLG PQEREQFEYT
201: VRAGKIINKQ YGDLLHTNED SEDAKWIFVM STSKKLYAGK KKKGLFHHSS FLAGGATLAA GRLVAENGIL KSISAYSGHY RPTDDTLDGF LSYLKENGVK
301: LDEVELHKAN EDSDMYEDNN LSRAATSEVS NDAKMYVPEI SEGASNTSSS VEEDPLPESV TYTRTLSGGL QSPRAVVPKT AILQRINSKK ASKSYQLGHQ
401: LSLKWSTGAG PRIGCVADYP IELRTQALEM LNLSPKFPPT PSSYVRIGGL VLPSPYPSPS NIDGTLC

Best Arabidopsis Sequence Match ( AT3G52870.1 )
(BLAST)

001: MQVVSSFDFQ SSPFSHGAGE ILISPVDHRE LSSHGDALEG ACDDSTRLAA VKVQKVYRSY RTRRRLADSV VVAEELWWQA MDYARLNHST ISFFDYSRPE
101: TAVSRWNRVS LNASKVGKGL SIVDKAQKLA FQHWIEAIDP RHRYGHNLHK YYEEWCKADA GQPFFYWLDV GGGIDLDLNE CPRSKLKQQC IRYLGPQERE
201: EYEYVIIEGK IVHKLTGKFL HTMHGSEGTK WIFVMSTFKK LYAGLKKKGR FHHSSFLAGG ATLAAGRVIV DNGVLKTISA YSGHYRPSDD SLDTFLGFLR
301: ENAVNLDNVE VHKASEDSDS YDDYVKSNGG SEPEPLKKED TTFQAETETD ENGNGTVGTL EEAKRSSYQR TLSGGLGSPK ANVPQKSMLL RINSKKQSRS
401: LQLGHQLSLK WSTGVGPRIG CAADYPVQLR TQALEFVNLS PKYRSSRLSP TGKLDV

Arabidopsis Description

IQM3IQ domain-containing protein IQM3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.