Factsheet for Bra019642.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76252	Canola	cytosol	99.34	99.34
Bra028537.1-P	Field mustard	cytosol	87.28	87.28
AT3G52870.1	Thale cress	cytosol	83.77	83.77
Solyc10g083360.1.1	Tomato	cytosol	59.65	58.37
KRG96176	Soybean	plastid	59.43	58.03
PGSC0003DMT400072375	Potato	cytosol	59.21	57.94
VIT_08s0007g03630.t01	Wine grape	cytosol	58.11	56.62
Solyc10g085610.1.1	Tomato	cytosol	53.95	56.55
EES09264	Sorghum	cytosol	55.7	55.82
KRH30882	Soybean	cytosol	57.46	55.27
GSMUA_Achr3P03060_001	Banana	cytosol	46.27	55.24
TraesCS5A01G129600.1	Wheat	cytosol	55.7	55.1
EES16640	Sorghum	cytosol	54.61	55.09
KRH32680	Soybean	cytosol	58.33	55.07
Zm00001d052525_P001	Maize	cytosol	55.7	54.27
Os12t0149900-01	Rice	cytosol	56.14	53.67
Zm00001d004916_P001	Maize	cytosol	42.98	53.41
HORVU6Hr1G019510.4	Barley	cytosol	55.92	53.35
TraesCS5D01G137100.1	Wheat	cytosol	56.14	53.33
TraesCS5B01G128200.1	Wheat	cytosol	56.14	53.33
TraesCS6D01G097300.1	Wheat	cytosol	56.14	52.89
HORVU5Hr1G041930.15	Barley	cytosol	55.92	52.8
TraesCS6B01G137500.1	Wheat	cytosol	55.7	52.59
TraesCS6A01G108900.1	Wheat	cytosol	55.92	52.58
PGSC0003DMT400022916	Potato	cytosol	59.65	52.31
Zm00001d035377_P001	Maize	cytosol	49.56	51.83
GSMUA_Achr6P13300_001	Banana	cytosol	56.14	51.72
Os11t0151002-00	Rice	cytosol	53.51	51.48
Solyc09g009770.2.1	Tomato	nucleus	59.21	51.43
EES09263	Sorghum	cytosol	50.88	51.1
TraesCS6D01G093400.1	Wheat	cytosol	53.73	51.04
TraesCS6B01G133900.1	Wheat	cytosol	53.07	50.73
KRH67885	Soybean	cytosol	35.75	45.79
TraesCS6A01G104600.1	Wheat	nucleus	26.97	45.22
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plastid	53.95	43.93
Bra021491.1-P	Field mustard	nucleus	45.83	42.39
Bra017264.1-P	Field mustard	endoplasmic reticulum, extracellular	30.04	40.29
Bra011409.1-P	Field mustard	plastid	39.25	37.92
Bra027414.1-P	Field mustard	nucleus	45.83	36.28
Bra014570.1-P	Field mustard	nucleus	44.08	35.7
Bra034295.1-P	Field mustard	plastid	40.13	34.92
Bra001512.1-P	Field mustard	cytosol	40.35	34.78
Bra002773.1-P	Field mustard	cytosol	38.6	34.71
Bra034546.1-P	Field mustard	cytosol	39.91	33.09
Bra035643.1-P	Field mustard	cytosol	39.47	31.91

Protein Annotations

EnsemblPlants:Bra019642.1	EnsemblPlants:Bra019642.1-P	EnsemblPlantsGene:Bra019642	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR31250	PANTHER:PTHR31250:SF23	PFscan:PS50096	UniParc:UPI000253E73A
UniProt:M4DSZ9	MapMan:35.1	:	:	:	:

Description

AT3G52870 (E=3e-223) | calmodulin-binding family protein

Coordinates

chrA06:-:5282332..5284964

Molecular Weight (calculated)

51378.4 Da

IEP (calculated)

7.667

GRAVY (calculated)

-0.541

Length

456 amino acids

Sequence
(BLAST)

001: MQVVANFDFQ PSPFSHATGE MLISPVGHRD ESFVNFTDAL EGASDDSPPS VAAVKVQKVY RSYRTRRRLA DSVVVAEELW WQAMDYARLN HSTISFFDYS
101: RPETAVCRWN RVSLNASKVG KGLSIVDKAQ KLAFQHWIEA IDPRHRYGHN LHVYYEEWCK ADAGQPFFYW LDVGDGKDMD LIDCSRSKLK QQCIKYLGPQ
201: ERVEYEYVII DGKIVHKLTG NFLHTMHGSE GTKWIFVMST FKKLYAGLKK KGRFHHSSFL AGGATLAAGR VVVDNGVLKT ISAYSGHYRP SDESLETFLS
301: FLRENEVSLD DVEVHKASED SENYDDYIKP NGDGTKSLKK EYATSCNAET ETDENSNGTV DETKGNSYQR TLSGGFESPK ADVPQKAMLQ RINSKKQSKS
401: LQLGHQLMLK WSTGAGPRIG CAADYPVQLR TQALEFVNLS PRYRTSTLSP TGRLDI

Best Arabidopsis Sequence Match ( AT3G52870.1 )
(BLAST)

001: MQVVSSFDFQ SSPFSHGAGE ILISPVDHRE LSSHGDALEG ACDDSTRLAA VKVQKVYRSY RTRRRLADSV VVAEELWWQA MDYARLNHST ISFFDYSRPE
101: TAVSRWNRVS LNASKVGKGL SIVDKAQKLA FQHWIEAIDP RHRYGHNLHK YYEEWCKADA GQPFFYWLDV GGGIDLDLNE CPRSKLKQQC IRYLGPQERE
201: EYEYVIIEGK IVHKLTGKFL HTMHGSEGTK WIFVMSTFKK LYAGLKKKGR FHHSSFLAGG ATLAAGRVIV DNGVLKTISA YSGHYRPSDD SLDTFLGFLR
301: ENAVNLDNVE VHKASEDSDS YDDYVKSNGG SEPEPLKKED TTFQAETETD ENGNGTVGTL EEAKRSSYQR TLSGGLGSPK ANVPQKSMLL RINSKKQSRS
401: LQLGHQLSLK WSTGVGPRIG CAADYPVQLR TQALEFVNLS PKYRSSRLSP TGKLDV

Arabidopsis Description

IQM3IQ domain-containing protein IQM3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFA4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.