Factsheet for VIT_09s0002g01680.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0009g01910.t01
VIT_08s0040g00470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57010.1	VIT_06s0009g01910.t01	AT5G21274.1	21798944
AT5G57010.1	VIT_08s0040g00470.t01	AT5G21274.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g04560.t01	Wine grape	cytosol	25.0	79.75
VIT_11s0016g01970.t01	Wine grape	cytosol	32.84	61.87
GSMUA_Achr4P09170_001	Banana	cytosol	29.37	60.91
Zm00001d050807_P001	Maize	cytosol	8.63	60.84
VIT_04s0008g01070.t01	Wine grape	cytosol, extracellular, nucleus	32.54	60.74
GSMUA_Achr8P24930_001	Banana	cytosol	23.02	60.26
GSMUA_Achr8P05470_001	Banana	plastid	29.56	59.72
GSMUA_Achr3P25890_001	Banana	mitochondrion	30.65	59.65
GSMUA_Achr8P26270_001	Banana	plastid	28.17	59.17
KRH47098	Soybean	nucleus	28.47	57.52
GSMUA_Achr4P08700_001	Banana	extracellular, nucleus, plastid, vacuole	30.56	57.46
KRH44122	Soybean	nucleus	28.47	57.4
AT5G57010.1	Thale cress	cytosol	27.78	56.57
Bra002773.1-P	Field mustard	cytosol	27.08	53.85
Zm00001d036000_P001	Maize	cytosol	7.44	53.19
KRH23287	Soybean	cytosol	26.59	52.76
KRH10031	Soybean	cytosol	23.71	50.74
Zm00001d009755_P001	Maize	plastid	22.12	50.0
Zm00001d042156_P001	Maize	mitochondrion	9.33	49.47
TraesCS3B01G238500.1	Wheat	cytosol, plastid	26.49	49.35
TraesCS3D01G209200.2	Wheat	plastid	26.69	48.73
HORVU3Hr1G049640.1	Barley	plastid	26.59	48.64
Bra035643.1-P	Field mustard	cytosol	27.18	48.58
TraesCS3A01G206400.1	Wheat	plastid	26.69	48.38
Os01t0570800-01	Rice	plastid	27.08	47.98
GSMUA_Achr3P32310_001	Banana	endoplasmic reticulum	41.37	46.28
Zm00001d044253_P001	Maize	plastid	25.79	46.26
EES03151	Sorghum	mitochondrion, plastid	26.29	46.01
VIT_08s0007g07190.t01	Wine grape	cytosol	24.01	45.4
VIT_13s0074g00760.t01	Wine grape	nucleus	19.35	43.62
EES18807	Sorghum	plastid	24.7	43.3
VIT_08s0007g03630.t01	Wine grape	cytosol	19.44	41.88
Zm00001d011228_P001	Maize	plastid	22.72	41.64
VIT_06s0004g00690.t01	Wine grape	nucleus	25.1	37.76

Protein Annotations

EntrezGene:100241298	wikigene:100241298	EntrezGene:100263563	wikigene:100263563	MapMan:35.1	ProteinID:CCB59313
ProteinID:CCB59313.1	UniProt:F6HXZ0	EMBL:FN596494	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	EntrezGene:LOC100241298	wikigene:LOC100241298	EntrezGene:LOC100263563	wikigene:LOC100263563
PFAM:PF00612	PFscan:PS50096	PANTHER:PTHR31250	PANTHER:PTHR31250:SF25	SMART:SM00015	UniParc:UPI0002109C9D
ArrayExpress:VIT_09s0002g01680	EnsemblPlantsGene:VIT_09s0002g01680	EnsemblPlants:VIT_09s0002g01680.t01	RefSeq:XP_002274659	RefSeq:XP_002274659.1	RefSeq:XP_002274686
RefSeq:XP_002274686.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:-:1517451..1523754

Molecular Weight (calculated)

113007.0 Da

IEP (calculated)

10.129

GRAVY (calculated)

-0.527

Length

1008 amino acids

Sequence
(BLAST)

0001: MGLPFSLPSS IPTQSLRTRL FGSTENVDTV IVRSISFNSN DGETMLRTVS FKKRDSDNIT ISDGSDEVVI EESIHFRKPE FKKLRLETTV SFKSIVLDGE
0101: NLDSREKGDE LTKKTNPAET VPDPAVLFSP RPVSELDAAA VKLQKVYKSY RTRRNLADCA VVVEELWWKA LDFATLKRSS VSFFNIEKPE TAVSRWARAS
0201: TRAAKVGKGL SKDEKAKKLA LRHWLEAIDP RHRYGHNLHL YYDVWFHSES SQPFFYWLDV GDGKELNLEK CSRAVLQRQC IKYLAPKERE TYEVIVDDGK
0301: LVYRRSGELV NTVEGSKWIF VLSTSRNMYV AEKKKGRFQH SSFLAGGATT AAGRLVAHNG VLEAIWPYSG HYHPTEENFM EFISFLEEHH VDLTNVKRCA
0401: VDDDNPTLKI ADSELKSSDS PRFPSGSITV SEAADADGVI TQEAKPTAIH QEDNVGRIGT DIEPAFGLGK RLSCQWTTGA GPRIRVLRDY PAELKIRALE
0501: QVNLSPRINP GAFGSSSIPV LPIPSPRPSP KIHLSPRLSY MGLPSPRHFL ITFFSILVFL HFKKTDFCLM GGSGNWLKSL IGHKNAQIKD HKEAGGNGRR
0601: KWRLWRSSSG GLGLKGKNVA ASEASDSSVV AGNGFSAAVA AVVRAPPKDF MVVRQEWAAI RIQTAFRGLL ARRALRALKA LVRLQAIVRG RQVRKQAAVT
0701: LRCMQALVRV QARVRAQCVS MASEGQAQQK VPDHLQNLPD PIKQAEEGWC DRRGTVDQVR TKLQMRQEGA IKRERAISYS ISQKPSRTNH CPYLRTSKSA
0801: NSLKQQKQDN NCPGLSWLER WMAAKPWENR LMEEVQTERP EMTPLSRRSE DCYTAGFRSN SSEHSILKPK RNNNSLTPRM YPRSPVVGQI SRSSSDPSSE
0901: FLYDGSSEST SSSSNTVMEM VEENHTSRPS YMNLTESIKA KQKASKYSSP PRPLMEDAQL HMKSMAISTG DTKSSTGSYT PSAKLCKDLY PTIQLDRFNR
1001: IKGNNCLF

Best Arabidopsis Sequence Match ( AT4G33050.3 )
(BLAST)

001: MGLEVGSLCF KLKDGGLTSR TNSFKRDDTN RHQNSPKSTM ERSLSFNSWE VPKETKTDSD FEVLETKKST PNTLNGRNCE RIQIKKPTVT PPEPFVFFSP
101: RPVTELDAAA TTLQKVYKSY RTRRNLADCA VVVEELWWRT LEGAALDLSS VSFFGEEKHE TAVSKWARAR KRAAKVGKGL SKDEKAQKLA LQHWLEAIDP
201: RHRYGHNLHF YYDVWSASKS TQPFFYWLDI GDGKDVNLEK HPRSVLQKQC IRYLGPMERE AYEVIVEDGR LMYKQGMTLI NSTEEAKSIF VLSTTRNLYV
301: GIKKKGLFQH SSFLSGGATT AAGRLVARDG ILEAIWPYSG HYLPTEDNFK EFISFLEEHN VDLTNVKRCS VNEEYSSFKS TADEEEERKE VSEEVEIPSE
401: KEERARPVFD PVKRLSCKWT SGYGPRIGCV RDYPMELQAQ ALEQVSLSPR VSPANSYGPI PSPRPSPKVR VSPRLAYMGI PSPRAVKC

Arabidopsis Description

EDA39calmodulin-binding family protein [Source:TAIR;Acc:AT4G33050]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.