Factsheet for VIT_04s0008g01070.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 3
golgi 1
plastid 2
extracellular 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75320	Canola	endoplasmic reticulum, extracellular	47.22	70.44
Bra017264.1-P	Field mustard	endoplasmic reticulum, extracellular	43.33	68.82
VIT_09s0002g04560.t01	Wine grape	cytosol	39.63	67.72
PGSC0003DMT400021177	Potato	cytosol, mitochondrion, nucleus, plastid	60.37	66.53
CDX68935	Canola	plastid	57.41	66.1
Bra011409.1-P	Field mustard	plastid	57.22	65.47
CDX77035	Canola	plastid	57.59	64.93
VIT_11s0016g01970.t01	Wine grape	cytosol	63.89	64.49
Zm00001d050807_P001	Maize	cytosol	16.85	63.64
GSMUA_Achr4P09170_001	Banana	cytosol	56.3	62.55
CDY35312	Canola	plastid	60.0	61.95
Bra034295.1-P	Field mustard	plastid	60.0	61.83
AT2G26190.1	Thale cress	plastid	60.74	61.65
KRH02687	Soybean	plastid	60.0	61.13
KRH37419	Soybean	cytosol, extracellular, nucleus, plastid	59.44	60.8
KRH19209	Soybean	cytosol	30.37	60.52
CDY45026	Canola	cytosol	57.59	60.39
KRH12419	Soybean	cytosol, plastid	58.7	60.15
GSMUA_Achr8P26270_001	Banana	plastid	52.78	59.38
GSMUA_Achr8P05470_001	Banana	plastid	54.81	59.32
GSMUA_Achr3P25890_001	Banana	mitochondrion	56.48	58.88
GSMUA_Achr4P08700_001	Banana	extracellular, nucleus, plastid, vacuole	58.15	58.58
GSMUA_Achr8P24930_001	Banana	cytosol	41.67	58.44
CDY28281	Canola	cytosol, plastid	59.07	57.27
Zm00001d036000_P001	Maize	cytosol	14.81	56.74
AT4G33050.5	Thale cress	plastid	58.7	56.61
Bra034546.1-P	Field mustard	cytosol	57.59	56.55
TraesCS3B01G238500.1	Wheat	cytosol, plastid	53.15	53.05
Zm00001d009755_P001	Maize	plastid	43.7	52.91
TraesCS3D01G209200.2	Wheat	plastid	53.33	52.17
HORVU3Hr1G049640.1	Barley	plastid	53.15	52.09
TraesCS3A01G206400.1	Wheat	plastid	53.52	51.98
Os01t0570800-01	Rice	plastid	54.44	51.67
Zm00001d042156_P001	Maize	mitochondrion	18.15	51.58
Solyc08g062930.1.1	Tomato	cytosol	36.67	50.77
EES03151	Sorghum	mitochondrion, plastid	52.41	49.13
Zm00001d044253_P001	Maize	plastid	50.74	48.75
EES18807	Sorghum	plastid	47.78	44.87
Zm00001d011228_P001	Maize	plastid	45.37	44.55
VIT_08s0007g07190.t01	Wine grape	cytosol	43.52	44.09
VIT_13s0074g00760.t01	Wine grape	nucleus	35.74	43.18
VIT_08s0007g03630.t01	Wine grape	cytosol	35.19	40.6
VIT_06s0004g00690.t01	Wine grape	nucleus	44.26	35.67
GSMUA_Achr3P32310_001	Banana	endoplasmic reticulum	56.48	33.85
VIT_09s0002g01680.t01	Wine grape	plastid	60.74	32.54

Protein Annotations

EntrezGene:100250890	wikigene:100250890	MapMan:35.1	EMBL:AM474585	ProteinID:CAN83680	ProteinID:CAN83680.1
ProteinID:CCB46557	ProteinID:CCB46557.1	UniProt:F6H3M4	EMBL:FN595231	EntrezGene:LOC100250890	wikigene:LOC100250890
PANTHER:PTHR31250	PANTHER:PTHR31250:SF1	TIGR:TC68878	UniParc:UPI00015C8963	ArrayExpress:VIT_04s0008g01070	EnsemblPlantsGene:VIT_04s0008g01070
EnsemblPlants:VIT_04s0008g01070.t01	unigene:Vvi.1598	RefSeq:XP_002278508	RefSeq:XP_002278508.1	RefSeq:XP_019075148.1	SEG:seg

Description

No Description!

Coordinates

chr4:+:905623..908685

Molecular Weight (calculated)

60495.8 Da

IEP (calculated)

8.859

GRAVY (calculated)

-0.449

Length

540 amino acids

Sequence
(BLAST)

001: MGLSLSTLSS AWNQILEHQF FWFSKPIETL MVRTTSLERK DGEKAMKAAS FKSDEPEKKI VERSLSFKKW ESEEANVEPS VSVSSNKIIM EKVDLNSISL
101: KSKINGSPIH KSKPTISLPE PMILFSPRPI SQLDAAATKV QKVYKSYRTR RNLADCAVVV EELWWKALDF ATLKRSSVSF FNIGKPETAT SRWTRAKTRL
201: AKVGKGLSKD EKAHMLALQH WLEAIDPRHR YGHNLHFYYD AWSASKSTEP FFFWLDVGDG KELNLQKCPR AVLQRQCIKY LGPNEREAYE VIVETGKLVY
301: KQSGMFLNTE EDSKWIFVLS TSRALYVGQK KKGVFQHSSF LSGGATTAAG RLVAHDGILE AIWPYSGHYL PSEENFKEFI TFLEEHNVDL TNVKKCAVDD
401: DTPSFKVTSD ESNAETMETE SSFVASAADA EEPIKDSTAD QEDDTKAAAA TAEAPVFDLA KRLSCKWTSG VGPRIGCVRD YPADLQSQAL EKVNLSPTNT
501: PSHSRNRLPI PSPRPSPKVR ISPRLAYMGI PSPRVSVVAN

Best Arabidopsis Sequence Match ( AT2G26190.3 )
(BLAST)

001: MGLSLSLLLS AWKEVVTTQF FSFKNPVESF LETRSFSLKL KEGGLTSRTN SFKSENPQEK SPKTGMERSL SFNSWEIVTE VETEPMNKED EEIVEPTKPA
101: RNSLNGRNCE RIQITKPTIT PPTPFVFFSP RPVTELDAAA TTLQKVYKSY RTRRNLADCA VVVEELWWKT LDAAALNLSS VAFFEEEKHE TAVSKWARAR
201: TRAAKVGKGL SKDEKAQKLA LQHWLEAIDP RHRYGHNLHF YYDVWSASMS AQPFFYWLDI GDGKDVNLEH HPRSVLQKQC IKYLGPLERE AYEVIVEDGK
301: LMNKQSMTLI NSTEDSKSIF VLSTTRTLYV GQKKKGRFQH SSFLSGGATT AAGRLVAREG ILEAIWPYSG HYLPTEDNFN EFISFLEENN VDMTNVKRCS
401: VNEEYSSFNS SGYEEEATKE EEAEKKPAET IVTEEQEEEK ERERPVFQLA KRLSCKWNSG VGPRIGCVRD YPMELQSQAF EQVSLSPRIS PGSTRFPSPY
501: GPIPSPRPSP RVRVSPRLAY MGIPSPRVQV NC

Arabidopsis Description

IQM4IQ domain-containing protein IQM4 [Source:UniProtKB/Swiss-Prot;Acc:O64851]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.