Factsheet for PGSC0003DMT400021177

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75320	Canola	endoplasmic reticulum, extracellular	51.02	69.06
Bra017264.1-P	Field mustard	endoplasmic reticulum, extracellular	46.73	67.35
PGSC0003DMT400082749	Potato	cytosol	61.43	64.59
CDX68935	Canola	plastid	60.82	63.54
Bra011409.1-P	Field mustard	plastid	61.02	63.35
CDX77035	Canola	plastid	61.22	62.63
VIT_04s0008g01070.t01	Wine grape	cytosol, extracellular, nucleus	66.53	60.37
CDY35312	Canola	plastid	62.24	58.32
KRH19209	Soybean	cytosol	32.24	58.3
Bra034295.1-P	Field mustard	plastid	62.24	58.21
KRH12419	Soybean	cytosol, plastid	62.04	57.69
CDY45026	Canola	cytosol	60.61	57.67
AT2G26190.1	Thale cress	plastid	62.04	57.14
KRH37419	Soybean	cytosol, extracellular, nucleus, plastid	61.43	57.01
KRH02687	Soybean	plastid	60.61	56.04
Solyc08g062930.1.1	Tomato	cytosol	44.08	55.38
AT4G33050.5	Thale cress	plastid	62.24	54.46
CDY28281	Canola	cytosol, plastid	61.84	54.4
Bra034546.1-P	Field mustard	cytosol	60.61	54.0
PGSC0003DMT400000881	Potato	cytosol	54.29	49.53
PGSC0003DMT400006372	Potato	endoplasmic reticulum, extracellular, golgi	30.0	48.04
PGSC0003DMT400072375	Potato	cytosol	40.2	42.27
PGSC0003DMT400080788	Potato	nucleus	44.29	39.82
PGSC0003DMT400022916	Potato	cytosol	40.61	38.27
PGSC0003DMT400021529	Potato	cytosol	46.12	35.31
PGSC0003DMT400060938	Potato	nucleus, plastid	42.24	29.53

Protein Annotations

EnsemblPlants:PGSC0003DMT400021177	EnsemblPlantsGene:PGSC0003DMG400008202	EntrezGene:102595008	PANTHER:PTHR31250	PANTHER:PTHR31250:SF1	PGSC:PGSC0003DMG400008202
SEG:seg	UniParc:UPI0002957A1B	UniProt:M1AEQ9	MapMan:35.1	:	:

Description

Calmodulin binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400008202]

Coordinates

chr8:+:35376218..35379436

Molecular Weight (calculated)

55688.6 Da

IEP (calculated)

9.483

GRAVY (calculated)

-0.493

Length

490 amino acids

Sequence
(BLAST)

001: MGRAIMRSVS IERKNRELSL MTLSFKEKND KNVRKSDCSE ESLKHEKQKL KTSVPITSLV VDQAPRISIP EPFVFFSPRP VTELDAAATK LQTVYKSYRT
101: RRNLADCAVV VEELWWKALD SAALKQSSIS FFDVNKHEAA VSRWSRARTR AAKVGKGLLK DEKAQKLALQ HWLEAIDPRH RYGHNLHFYY DVWFNSKSTQ
201: PFFYWLDVGD GKELNLENCK RADLQRQCIK YLGPNEREAY EVVVEDGKLV YKQSGMLLNT TEGSKWIFVL STSRVLYVGK KKKGVFQHSS FLSGGATTAA
301: GRLVVQDGIL EAIWPYSGHY LPTEDNFKEF INFLEEHHVD LANVKKCAID DDRLLSVSNK DMEKTLSQNC DADKAKDNGP VSDVLKITVH EENFTHTSKD
401: KIEEPVFDLT KRLSCKWTSG VGPRIGCVRD YPMDLQSQAL EAVNLSPRVN LSQPKNCYPI PSPRPSPKIR VSPRLAYMGL PSPRVSITTL

Best Arabidopsis Sequence Match ( AT4G33050.3 )
(BLAST)

001: MGLEVGSLCF KLKDGGLTSR TNSFKRDDTN RHQNSPKSTM ERSLSFNSWE VPKETKTDSD FEVLETKKST PNTLNGRNCE RIQIKKPTVT PPEPFVFFSP
101: RPVTELDAAA TTLQKVYKSY RTRRNLADCA VVVEELWWRT LEGAALDLSS VSFFGEEKHE TAVSKWARAR KRAAKVGKGL SKDEKAQKLA LQHWLEAIDP
201: RHRYGHNLHF YYDVWSASKS TQPFFYWLDI GDGKDVNLEK HPRSVLQKQC IRYLGPMERE AYEVIVEDGR LMYKQGMTLI NSTEEAKSIF VLSTTRNLYV
301: GIKKKGLFQH SSFLSGGATT AAGRLVARDG ILEAIWPYSG HYLPTEDNFK EFISFLEEHN VDLTNVKRCS VNEEYSSFKS TADEEEERKE VSEEVEIPSE
401: KEERARPVFD PVKRLSCKWT SGYGPRIGCV RDYPMELQAQ ALEQVSLSPR VSPANSYGPI PSPRPSPKVR VSPRLAYMGI PSPRAVKC

Arabidopsis Description

EDA39calmodulin-binding family protein [Source:TAIR;Acc:AT4G33050]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.