Factsheet for VIT_11s0016g01970.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400082749	Potato	cytosol	61.68	70.82
Solyc07g040710.2.1	Tomato	cytosol	61.12	70.17
Solyc12g008960.1.1	Tomato	nucleus	64.3	69.78
VIT_09s0002g04560.t01	Wine grape	cytosol	39.44	66.77
VIT_04s0008g01070.t01	Wine grape	cytosol, extracellular, nucleus	64.49	63.89
GSMUA_Achr4P09170_001	Banana	cytosol	57.38	63.17
Zm00001d050807_P001	Maize	cytosol	16.45	61.54
GSMUA_Achr8P26270_001	Banana	plastid	53.64	59.79
GSMUA_Achr8P24930_001	Banana	cytosol	42.62	59.22
GSMUA_Achr4P08700_001	Banana	extracellular, nucleus, plastid, vacuole	58.69	58.58
GSMUA_Achr8P05470_001	Banana	plastid	54.58	58.52
GSMUA_Achr3P25890_001	Banana	mitochondrion	56.45	58.3
PGSC0003DMT400000881	Potato	cytosol	54.21	54.0
Zm00001d036000_P001	Maize	cytosol	14.21	53.9
TraesCS3B01G238500.1	Wheat	cytosol, plastid	51.78	51.2
Zm00001d042156_P001	Maize	mitochondrion	18.13	51.05
TraesCS3A01G206400.1	Wheat	plastid	52.34	50.36
TraesCS3D01G209200.2	Wheat	plastid	51.78	50.18
Zm00001d009755_P001	Maize	plastid	41.68	50.0
Os01t0570800-01	Rice	plastid	52.9	49.74
HORVU3Hr1G049640.1	Barley	plastid	51.03	49.55
Zm00001d044253_P001	Maize	plastid	49.91	47.51
EES03151	Sorghum	mitochondrion, plastid	51.03	47.4
VIT_13s0074g00760.t01	Wine grape	nucleus	37.2	44.52
VIT_08s0007g07190.t01	Wine grape	cytosol	43.18	43.34
EES18807	Sorghum	plastid	46.54	43.3
Zm00001d011228_P001	Maize	plastid	43.93	42.73
VIT_08s0007g03630.t01	Wine grape	cytosol	36.45	41.67
VIT_06s0004g00690.t01	Wine grape	nucleus	45.42	36.27
GSMUA_Achr3P32310_001	Banana	endoplasmic reticulum	56.64	33.63
VIT_09s0002g01680.t01	Wine grape	plastid	61.87	32.84

Protein Annotations

EntrezGene:100256072	wikigene:100256072	MapMan:35.1	ProteinID:CBI27890	ProteinID:CBI27890.3	UniProt:D7TCN2
EMBL:FN595756	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS
EntrezGene:LOC100256072	wikigene:LOC100256072	PFscan:PS50096	PANTHER:PTHR31250	PANTHER:PTHR31250:SF25	TIGR:TC63476
UniParc:UPI0001984180	ArrayExpress:VIT_11s0016g01970	EnsemblPlantsGene:VIT_11s0016g01970	EnsemblPlants:VIT_11s0016g01970.t01	unigene:Vvi.17562	RefSeq:XP_002279373
RefSeq:XP_002279373.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:-:1596759..1599916

Molecular Weight (calculated)

60533.8 Da

IEP (calculated)

8.756

GRAVY (calculated)

-0.529

Length

535 amino acids

Sequence
(BLAST)

001: MGLSLSLLNS AWEEIVKHRF FSLRDNINFT SKDGEMTILK SDSFKKTDSE TITTRTDNSR NLKNSRPEKV ILERTLSMLE RSLSFTSLVE DKQNLGSNNL
101: DGKQNRLKSN LIPTISLPEP PAIFFFPRPV SDLDAAAIKI QKFYKSYRTR RNLADCAVVI EELWWKALDF AALRRSSVSF FNEEKPETAV SKWARARTRA
201: AKVGKGLSKD EKAQKLALQH WLEAIDPRHR YGHNLHLYYD IWFKSSSSQP FFYWLDVGDG KETYLEKCPR PVLQRQCIKY LGPKEREAYE VIVENGKLVF
301: RQSRMLVETT EGSKWIFVLS TLRALYVGKK KKGEFQHSSF LSGGATTAAG RLVAHNGIIE AIWPYSGHYH PTEENFREFV SFLEEHNVDL TNVKKCAIDD
401: DDSTSFKVTS EEAQAEPMVD AAKTRDSEET DGATMEETEV ADEANVEAPV FELTKRLSCK WTTGTGPRIG CVRDYPSELQ SRALEQVNLS PRVTPGPFGN
501: CGPIPSPRPS PKIRLSPRLA YMGLPSPRTP IAASG

Best Arabidopsis Sequence Match ( AT4G33050.3 )
(BLAST)

001: MGLEVGSLCF KLKDGGLTSR TNSFKRDDTN RHQNSPKSTM ERSLSFNSWE VPKETKTDSD FEVLETKKST PNTLNGRNCE RIQIKKPTVT PPEPFVFFSP
101: RPVTELDAAA TTLQKVYKSY RTRRNLADCA VVVEELWWRT LEGAALDLSS VSFFGEEKHE TAVSKWARAR KRAAKVGKGL SKDEKAQKLA LQHWLEAIDP
201: RHRYGHNLHF YYDVWSASKS TQPFFYWLDI GDGKDVNLEK HPRSVLQKQC IRYLGPMERE AYEVIVEDGR LMYKQGMTLI NSTEEAKSIF VLSTTRNLYV
301: GIKKKGLFQH SSFLSGGATT AAGRLVARDG ILEAIWPYSG HYLPTEDNFK EFISFLEEHN VDLTNVKRCS VNEEYSSFKS TADEEEERKE VSEEVEIPSE
401: KEERARPVFD PVKRLSCKWT SGYGPRIGCV RDYPMELQAQ ALEQVSLSPR VSPANSYGPI PSPRPSPKVR VSPRLAYMGI PSPRAVKC

Arabidopsis Description

EDA39calmodulin-binding family protein [Source:TAIR;Acc:AT4G33050]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.