CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01631
EES09201
EES16322
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57010.1	EES01631	AT5G21274.1	21798944
AT5G57010.1	EES09201	AT5G21274.1	21798944
AT5G57010.1	EES16322	AT5G21274.1	21798944
AT5G57010.1	OQU78227	AT5G21274.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044253_P001	Maize	plastid	84.72	86.83
TraesCS3B01G238500.1	Wheat	cytosol, plastid	66.15	70.43
Os01t0570800-01	Rice	plastid	69.44	70.3
TraesCS3D01G209200.2	Wheat	plastid	66.67	69.57
HORVU3Hr1G049640.1	Barley	plastid	66.49	69.51
TraesCS3A01G206400.1	Wheat	plastid	67.01	69.42
CDX75320	Canola	endoplasmic reticulum, extracellular	39.41	62.71
Bra017264.1-P	Field mustard	endoplasmic reticulum, extracellular	35.59	60.29
CDX68935	Canola	plastid	46.53	57.14
Bra011409.1-P	Field mustard	plastid	46.35	56.57
Solyc03g121770.1.1	Tomato	cytosol	26.04	56.18
VIT_09s0002g04560.t01	Wine grape	cytosol	30.73	56.01
CDX77035	Canola	plastid	46.53	55.95
GSMUA_Achr8P26270_001	Banana	plastid	46.18	55.42
EES18807	Sorghum	plastid	54.34	54.43
GSMUA_Achr3P25890_001	Banana	mitochondrion	48.09	53.47
KRH19209	Soybean	cytosol	25.0	53.14
GSMUA_Achr8P05470_001	Banana	plastid	45.83	52.91
VIT_04s0008g01070.t01	Wine grape	cytosol, extracellular, nucleus	49.13	52.41
CDY35312	Canola	plastid	47.57	52.39
Bra034295.1-P	Field mustard	plastid	47.4	52.1
CDY45026	Canola	cytosol	46.35	51.84
AT2G26190.1	Thale cress	plastid	47.4	51.32
VIT_11s0016g01970.t01	Wine grape	cytosol	47.4	51.03
KRH12419	Soybean	cytosol, plastid	46.35	50.66
KRH02687	Soybean	plastid	45.66	49.62
KRH37419	Soybean	cytosol, extracellular, nucleus, plastid	45.31	49.43
AT5G57010.1	Thale cress	cytosol	42.19	49.09
KRH47098	Soybean	nucleus	42.19	48.7
KRH44122	Soybean	nucleus	42.19	48.6
Bra034546.1-P	Field mustard	cytosol	46.35	48.55
Bra002773.1-P	Field mustard	cytosol	42.53	48.32
CDY28281	Canola	cytosol, plastid	46.53	48.11
AT4G33050.5	Thale cress	plastid	46.53	47.86
KRH23287	Soybean	cytosol	40.62	46.06
KXG21506	Sorghum	cytosol	43.4	44.88
KRH10031	Soybean	cytosol	36.46	44.59
Bra035643.1-P	Field mustard	cytosol	42.01	42.91
EES09264	Sorghum	cytosol	33.51	42.42
PGSC0003DMT400006372	Potato	endoplasmic reticulum, extracellular, golgi	22.22	41.83
EES16640	Sorghum	cytosol	32.81	41.81
EER92212	Sorghum	cytosol	39.24	39.37
EES09263	Sorghum	cytosol	29.34	37.22
EER97603	Sorghum	nucleus	36.98	33.65
KXG40105	Sorghum	cytosol	36.98	33.44
EER94258	Sorghum	cytosol	37.33	31.99
VIT_09s0002g01680.t01	Wine grape	plastid	46.01	26.29

Protein Annotations

EnsemblPlants:EES03151	EnsemblPlantsGene:SORBI_3003G193800	EntrezGene:8078619	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000048	InterPro:IQ_motif_EF-hand-BS	PANTHER:PTHR31250	PANTHER:PTHR31250:SF1	PFscan:PS50096	ProteinID:EES03151
ProteinID:EES03151.1	RefSeq:XP_002458031.1	SEG:seg	unigene:Sbi.14079	UniParc:UPI0001A84DC1	UniProt:C5XNR6
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:51645422..51648223

Molecular Weight (calculated)

63388.4 Da

IEP (calculated)

9.998

GRAVY (calculated)

-0.500

Length

576 amino acids

Sequence
(BLAST)

001: MTLRLLTTTE RNHLLSPKPQ SPRDAALSLL RSPRLSCGGT GSPKPKSAKM AHGGLERSLS FKNWEASTEA AAASRGGGGI NGTRPGTLAL QQQQQQSPRR
101: VSPQAQAMIE YISPRPRVEL DQAATKLQKI YKGLRTRRNL ADGAIIAEEL WWKTVDSVYL NIKSISFFHE DKQETAASRW SRAGKRIAKV GKGLSKDDKA
201: QKLALQHWLE AIDPRHRYGH NLHLYYDIWS ASSSCEPFFY WLDVGSGRDL HHHKCPRSKL NSQLIMYLGP VERAAYEVVV EEGRLLYKQS GDLVTTNEES
301: KWIFVLSTSR SLYVGQKRKG KFQHSSFLSG AATSAAGRLV AKEGVLKAIW PYSGHYLPTE ENFREFITFL EENNVDLANV KRCSVDDDEY PSFKKPAAAA
401: AEEAAPVAST EEGDAHAEAE AEQPPVVELP AVDIVKEEAT DVQEPAKMMM ASRRPSFKWS TPTGARIGCL QNYPADVQSM ALEQVNLSPR VAVAPSPRLP
501: IPSPRPSPKI RLSPNLHYMG CPTPTATGGA AATTTTTTSR LAIPSPAARR SSPKQHFMGF HTPAVALTLP KHKAAK

Best Arabidopsis Sequence Match ( AT2G26190.3 )
(BLAST)

001: MGLSLSLLLS AWKEVVTTQF FSFKNPVESF LETRSFSLKL KEGGLTSRTN SFKSENPQEK SPKTGMERSL SFNSWEIVTE VETEPMNKED EEIVEPTKPA
101: RNSLNGRNCE RIQITKPTIT PPTPFVFFSP RPVTELDAAA TTLQKVYKSY RTRRNLADCA VVVEELWWKT LDAAALNLSS VAFFEEEKHE TAVSKWARAR
201: TRAAKVGKGL SKDEKAQKLA LQHWLEAIDP RHRYGHNLHF YYDVWSASMS AQPFFYWLDI GDGKDVNLEH HPRSVLQKQC IKYLGPLERE AYEVIVEDGK
301: LMNKQSMTLI NSTEDSKSIF VLSTTRTLYV GQKKKGRFQH SSFLSGGATT AAGRLVAREG ILEAIWPYSG HYLPTEDNFN EFISFLEENN VDMTNVKRCS
401: VNEEYSSFNS SGYEEEATKE EEAEKKPAET IVTEEQEEEK ERERPVFQLA KRLSCKWNSG VGPRIGCVRD YPMELQSQAF EQVSLSPRIS PGSTRFPSPY
501: GPIPSPRPSP RVRVSPRLAY MGIPSPRVQV NC

Arabidopsis Description

IQM4IQ domain-containing protein IQM4 [Source:UniProtKB/Swiss-Prot;Acc:O64851]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.