Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G377900.1 | Wheat | cytosol | 95.69 | 94.98 |
| TraesCS5D01G385200.2 | Wheat | cytosol | 88.95 | 85.28 |
| HORVU2Hr1G015200.2 | Barley | cytosol | 63.67 | 85.0 |
| HORVU5Hr1G093140.18 | Barley | cytosol, nucleus | 89.7 | 83.89 |
| HORVU1Hr1G045060.3 | Barley | nucleus | 56.74 | 82.11 |
| HORVU5Hr1G120690.3 | Barley | nucleus | 42.7 | 75.25 |
| EER92212 | Sorghum | cytosol | 79.21 | 73.69 |
| Zm00001d047402_P001 | Maize | cytosol | 72.66 | 72.12 |
| Os03t0374500-00 | Rice | nucleus | 76.78 | 71.06 |
| TraesCS2A01G154900.1 | Wheat | cytosol | 64.79 | 61.35 |
| Bra021491.1-P | Field mustard | nucleus | 50.19 | 54.36 |
| VIT_08s0007g07190.t01 | Wine grape | cytosol | 51.12 | 51.22 |
| Bra027414.1-P | Field mustard | nucleus | 54.49 | 50.52 |
| CDY45027 | Canola | extracellular | 1.12 | 50.0 |
| Bra001512.1-P | Field mustard | cytosol | 48.5 | 48.96 |
| AT3G13600.1 | Thale cress | nucleus | 55.24 | 48.76 |
| TraesCS4A01G021000.1 | Wheat | nucleus | 54.68 | 47.87 |
| Solyc01g044420.2.1 | Tomato | nucleus | 50.56 | 46.88 |
| KRH71773 | Soybean | nucleus | 48.88 | 46.61 |
| PGSC0003DMT400080788 | Potato | nucleus | 47.38 | 46.42 |
| KRG97321 | Soybean | nucleus | 48.31 | 46.15 |
| KRH58931 | Soybean | nucleus | 56.55 | 46.04 |
| Bra014570.1-P | Field mustard | nucleus | 48.31 | 45.83 |
| TraesCS5A01G129600.1 | Wheat | cytosol | 39.51 | 45.77 |
| KRH42833 | Soybean | cytosol | 55.62 | 44.93 |
| TraesCS6A01G108900.1 | Wheat | cytosol | 40.64 | 44.74 |
| AT3G58480.1 | Thale cress | nucleus | 48.13 | 44.7 |
| TraesCS1A01G125400.1 | Wheat | nucleus | 43.07 | 44.49 |
| VIT_06s0004g00690.t01 | Wine grape | nucleus | 55.81 | 44.48 |
| CDY06038 | Canola | mitochondrion, nucleus | 5.99 | 44.44 |
| KRH38004 | Soybean | cytosol | 49.44 | 44.37 |
| Solyc01g005800.2.1 | Tomato | nucleus | 53.37 | 43.12 |
| GSMUA_Achr6P01510_001 | Banana | nucleus | 16.67 | 43.0 |
| Solyc10g078650.1.1 | Tomato | nucleus | 47.57 | 41.85 |
| Solyc10g080640.1.1 | Tomato | nucleus | 49.44 | 41.71 |
| TraesCS3A01G206400.1 | Wheat | plastid | 43.07 | 41.37 |
| PGSC0003DMT400021529 | Potato | cytosol | 48.88 | 40.78 |
| TraesCS6A01G104600.1 | Wheat | nucleus | 19.1 | 37.5 |
| PGSC0003DMT400060938 | Potato | nucleus, plastid | 45.13 | 34.38 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G375700.1 | EnsemblPlantsGene:TraesCS5A01G375700 | PANTHER:PTHR31250 | PANTHER:PTHR31250:SF16 | SEG:seg | MapMan:35.1 |
Description
No Description!
Coordinates
chr5A:+:573606727..573609072
Molecular Weight (calculated)
59696.5 Da
IEP (calculated)
8.601
GRAVY (calculated)
-0.615
Length
534 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVMFSCPAD DYDPMEEGIL APADGGEPTM LRALGSGKLL IQGSLSFKRE RQLDDSPGSL QLETEISIRT AGAGAEAEAP PPLAPRELAR LSAGAESPRH
101: DAAALRLQKV YKSFRTRRQL ADCAVLVEQS WWKLLDFALL NRSSVSFFDI EKQETAVSKW SRARSRAAKV GKGLSKDDKA QKLALQHWLE AIDPRHRYGH
201: NLHYYYDCWL HSESNQPFFY WLDVGEGKEI NLEGKCSRSK LLSQCIKYLG PKEREDYEVV IEDSKLLYKK SRQIIDTSFG PRDAKWIFVL STSKSLYVGQ
301: KKKGKFQHSS FLAGGATSAA GRLVAENGTL KAIWPHSGHY RPTEENFQEF KSFLMDNLVD LTDVKMSPAE EDEEFWGSLK RISSENDKSE DGPAAVEETG
401: SLQTTQAIQT TSTETEKREE PVVAREKILQ RINSKKDMKS YQLGKQLSFK WTTGAGPRIG CVRDYPSELQ AHALEQMNLS PRCAAAARSA STRFASPLRR
501: SFNSIVTKGG ENETSTPRGA FRSPLRHGLA ADER
101: DAAALRLQKV YKSFRTRRQL ADCAVLVEQS WWKLLDFALL NRSSVSFFDI EKQETAVSKW SRARSRAAKV GKGLSKDDKA QKLALQHWLE AIDPRHRYGH
201: NLHYYYDCWL HSESNQPFFY WLDVGEGKEI NLEGKCSRSK LLSQCIKYLG PKEREDYEVV IEDSKLLYKK SRQIIDTSFG PRDAKWIFVL STSKSLYVGQ
301: KKKGKFQHSS FLAGGATSAA GRLVAENGTL KAIWPHSGHY RPTEENFQEF KSFLMDNLVD LTDVKMSPAE EDEEFWGSLK RISSENDKSE DGPAAVEETG
401: SLQTTQAIQT TSTETEKREE PVVAREKILQ RINSKKDMKS YQLGKQLSFK WTTGAGPRIG CVRDYPSELQ AHALEQMNLS PRCAAAARSA STRFASPLRR
501: SFNSIVTKGG ENETSTPRGA FRSPLRHGLA ADER
001: MGLSLSLLLS AWKEVVTTQF FSFKNPVESF LETRSFSLKL KEGGLTSRTN SFKSENPQEK SPKTGMERSL SFNSWEIVTE VETEPMNKED EEIVEPTKPA
101: RNSLNGRNCE RIQITKPTIT PPTPFVFFSP RPVTELDAAA TTLQKVYKSY RTRRNLADCA VVVEELWWKT LDAAALNLSS VAFFEEEKHE TAVSKWARAR
201: TRAAKVGKGL SKDEKAQKLA LQHWLEAIDP RHRYGHNLHF YYDVWSASMS AQPFFYWLDI GDGKDVNLEH HPRSVLQKQC IKYLGPLERE AYEVIVEDGK
301: LMNKQSMTLI NSTEDSKSIF VLSTTRTLYV GQKKKGRFQH SSFLSGGATT AAGRLVAREG ILEAIWPYSG HYLPTEDNFN EFISFLEENN VDMTNVKRCS
401: VNEEYSSFNS SGYEEEATKE EEAEKKPAET IVTEEQEEEK ERERPVFQLA KRLSCKWNSG VGPRIGCVRD YPMELQSQAF EQVSLSPRIS PGSTRFPSPY
501: GPIPSPRPSP RVRVSPRLAY MGIPSPRVQV NC
101: RNSLNGRNCE RIQITKPTIT PPTPFVFFSP RPVTELDAAA TTLQKVYKSY RTRRNLADCA VVVEELWWKT LDAAALNLSS VAFFEEEKHE TAVSKWARAR
201: TRAAKVGKGL SKDEKAQKLA LQHWLEAIDP RHRYGHNLHF YYDVWSASMS AQPFFYWLDI GDGKDVNLEH HPRSVLQKQC IKYLGPLERE AYEVIVEDGK
301: LMNKQSMTLI NSTEDSKSIF VLSTTRTLYV GQKKKGRFQH SSFLSGGATT AAGRLVAREG ILEAIWPYSG HYLPTEDNFN EFISFLEENN VDMTNVKRCS
401: VNEEYSSFNS SGYEEEATKE EEAEKKPAET IVTEEQEEEK ERERPVFQLA KRLSCKWNSG VGPRIGCVRD YPMELQSQAF EQVSLSPRIS PGSTRFPSPY
501: GPIPSPRPSP RVRVSPRLAY MGIPSPRVQV NC
Arabidopsis Description
IQM4IQ domain-containing protein IQM4 [Source:UniProtKB/Swiss-Prot;Acc:O64851]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.