CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06038	Canola	mitochondrion, nucleus	27.59	33.33
CDY45027	Canola	extracellular	2.3	16.67
CDX88987	Canola	nucleus	49.43	7.79
CDY00568	Canola	nucleus	49.43	7.68
CDX75320	Canola	endoplasmic reticulum, extracellular	29.89	7.18
CDX68935	Canola	plastid	36.78	6.82
CDX77035	Canola	plastid	36.78	6.68
CDY35312	Canola	plastid	39.08	6.5
GSMUA_Achr7P09200_001	Banana	cytosol, extracellular, nucleus, plastid	36.78	6.27
GSMUA_Achr6P05460_001	Banana	cytosol	37.93	6.07
CDY45026	Canola	cytosol	35.63	6.02
CDX82532	Canola	cytosol	33.33	5.78
Zm00001d037759_P002	Maize	mitochondrion	36.78	5.78
KXG21506	Sorghum	cytosol	36.78	5.75
CDY28281	Canola	cytosol, plastid	36.78	5.75
CDY60813	Canola	cytosol	29.89	5.63
Os05t0197300-01	Rice	cytosol	35.63	5.58
TraesCS1A01G125400.1	Wheat	nucleus	32.18	5.42
TraesCS1D01G128400.2	Wheat	nucleus	34.48	5.39
CDY37478	Canola	nucleus	33.33	5.23
GSMUA_Achr10P...	Banana	endoplasmic reticulum	31.03	5.22
GSMUA_Achr6P04920_001	Banana	endoplasmic reticulum, vacuole	31.03	5.22
CDX75719	Canola	cytosol	31.03	5.17
CDY23623	Canola	nucleus	33.33	5.05
CDX67541	Canola	cytosol	26.44	5.04
CDY13342	Canola	cytosol	26.44	5.04
CDX97500	Canola	nucleus	33.33	5.03
TraesCS1B01G143800.1	Wheat	cytosol	33.33	5.0
CDX76252	Canola	cytosol	25.29	4.82
HORVU1Hr1G028900.11	Barley	cytosol, mitochondrion, nucleus	33.33	4.76
CDX95381	Canola	cytosol	24.14	4.61
CDY13341	Canola	cytosol	5.75	2.76

Protein Annotations

EnsemblPlants:CDX80650	EnsemblPlantsGene:GSBRNA2T00133790001	PANTHER:PTHR31250	PANTHER:PTHR31250:SF14	ProteinID:CDX80650	ProteinID:CDX80650.1
SignalP:SignalP-noTM	UniParc:UPI0004EF2DDA	MapMan:35.1	:	:	:

Description

BnaC07g27940D

Coordinates

chrLK031821:+:1830945..1833444

Molecular Weight (calculated)

10130.5 Da

IEP (calculated)

4.902

GRAVY (calculated)

0.395

Length

87 amino acids

Sequence
(BLAST)

1: MVLIFLFFLV NRILCIYATL EMEYWCWAYP RISCMIYYPP ELQFRVLEEA QLSPRASSFS NPSPFSLVRS LGTSLGRSPL VQELESL

Best Arabidopsis Sequence Match ( AT3G58480.1 )
(BLAST)

001: METKTILRSI SFNDIDSDST ITESPEARKT LYNRSLSGKG TQRSRISPGD VENNFSIKPL TFMKEDDRYK MRIWKPVCEN EHAKEFLALL LGDGTYQAAL
101: KLQKVYRSFR TRRRLADCAV VVEQRWWKVL DFAELKRSSI SFFEIEKQET AVSRWSRART RAAKVGKGLS KDEKARKLAL QHWLEAIDPR HRYGHNLQFY
201: YHAWLHCDSK QPFFYWLDIG QGKELNHERC PRSKLYQQSI KYLGPTEREA YEVIIEDGKL MYKQSGIVLD TKEGPPDAKW IFVLSVSKIL YVGMKKKGNF
301: QHSSFLAGGA TLSAGRIVVD DGVLKAVWPH SGHYLPTEEN FQAFMSFLRE NNVDLANVKK NPDEEDGEAP AKVKRMPSRI KETEEEHCDF VDAETGFSPN
401: TKPNNHAELQ TLSRFHSKLS RLDEIPDEDD NMIEEEQDDE EEPETPSEQG YETAEETFIA EEEFTYPKSN LFDEDIEDYE KPVLKEKIMR RIDSHKGIKS
501: YQLAERLHSR WSTGAGPRIS CMRDYPSELQ FRVLEQAHLS PRASSNSSKI SPFAPVRTRG TSLGRSPLAE ELENL

Arabidopsis Description

IQM6IQ domain-containing protein IQM6 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2G8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.