Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60813 | Canola | cytosol | 82.34 | 98.92 |
| Bra021491.1-P | Field mustard | nucleus | 81.44 | 91.68 |
| CDX97500 | Canola | nucleus | 88.65 | 85.42 |
| CDY23623 | Canola | nucleus | 88.11 | 85.19 |
| AT3G13600.1 | Thale cress | nucleus | 90.27 | 82.81 |
| CDX75719 | Canola | cytosol | 69.73 | 74.14 |
| Solyc01g044420.2.1 | Tomato | nucleus | 59.82 | 57.64 |
| PGSC0003DMT400080788 | Potato | nucleus | 56.4 | 57.43 |
| KRH58931 | Soybean | nucleus | 67.21 | 56.86 |
| KRH42833 | Soybean | cytosol | 67.21 | 56.43 |
| CDX75320 | Canola | endoplasmic reticulum, extracellular | 36.76 | 56.35 |
| KRG97321 | Soybean | nucleus | 56.22 | 55.81 |
| CDX82532 | Canola | cytosol | 48.83 | 53.98 |
| VIT_06s0004g00690.t01 | Wine grape | nucleus | 64.14 | 53.13 |
| Solyc01g005800.2.1 | Tomato | nucleus | 60.54 | 50.83 |
| CDX68935 | Canola | plastid | 42.88 | 50.75 |
| CDX88987 | Canola | nucleus | 49.37 | 49.64 |
| CDX77035 | Canola | plastid | 42.52 | 49.27 |
| CDY00568 | Canola | nucleus | 49.19 | 48.75 |
| CDY06038 | Canola | mitochondrion, nucleus | 6.13 | 47.22 |
| CDY35312 | Canola | plastid | 43.42 | 46.08 |
| CDX76252 | Canola | cytosol | 37.66 | 45.83 |
| CDY45026 | Canola | cytosol | 42.16 | 45.44 |
| CDY13342 | Canola | cytosol | 37.3 | 45.39 |
| CDX95381 | Canola | cytosol | 37.3 | 45.39 |
| CDX67541 | Canola | cytosol | 37.3 | 45.39 |
| CDY13341 | Canola | cytosol | 14.23 | 43.65 |
| CDY28281 | Canola | cytosol, plastid | 43.42 | 43.27 |
| CDY45027 | Canola | extracellular | 0.9 | 41.67 |
| CDX80650 | Canola | extracellular | 5.23 | 33.33 |
Protein Annotations
| EnsemblPlants:CDY37478 | EnsemblPlantsGene:GSBRNA2T00064067001 | PANTHER:PTHR31250 | PANTHER:PTHR31250:SF4 | ProteinID:CDY37478 | ProteinID:CDY37478.1 |
| SEG:seg | UniParc:UPI0004EDD228 | UniProt:A0A078HKT5 | MapMan:35.1 | : | : |
Description
BnaC01g37540DBnaC01g37540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKT5]
Coordinates
chrLK032401:+:37452..39641
Molecular Weight (calculated)
63205.0 Da
IEP (calculated)
7.142
GRAVY (calculated)
-0.617
Length
555 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVSFSCQFE QDDVEAALDS VTVKSISFGD DDECKTPKRS VNFSDGTLEP TILKSMGSGG KMVVEKSVSF KGMQLERMIS LKRSLLKEKD NAGMIARELS
101: VLDPRNPKHE AAIKLQKVYK SFRTRRKLAD CAVLVEQSWW KLLDFAELKR SSISFFDIEK HETAISRWSR ARTRAAKVGK GLSKNGKAQK LALQHWLEAI
201: DPRHRYGHNL HFYYNKWLHC QSREPFFYWL DIGEGKEVNL VEKCPRSKLQ QQCIKYLGPM ERKAYEVVVE DGKFFYKNTG EMLHTSSLED SDSKWIFVLS
301: TSKVLYVGKK KKGTFQHSSF LAGGATVAAG RLVVEDGVLK AVWPHSGHYQ PTEENFLDFL SFLRENDVDI TDVKMSPTDE DEFSMYKQRS THMRNHSLEE
401: DLEAEKTVMA DPREEETTPV MNNIETPKKM ESLSIFGDET QSKVTEDYDS EETKESEEVV NIPEESILKR INSKKETKSF QLGKQLSCKW TTGAGPRIGC
501: VRDYPSELQF QALEQVNLSP RCGSVSRLCF SSSSQTQTPQ MSPLWKSLPG DITDS
101: VLDPRNPKHE AAIKLQKVYK SFRTRRKLAD CAVLVEQSWW KLLDFAELKR SSISFFDIEK HETAISRWSR ARTRAAKVGK GLSKNGKAQK LALQHWLEAI
201: DPRHRYGHNL HFYYNKWLHC QSREPFFYWL DIGEGKEVNL VEKCPRSKLQ QQCIKYLGPM ERKAYEVVVE DGKFFYKNTG EMLHTSSLED SDSKWIFVLS
301: TSKVLYVGKK KKGTFQHSSF LAGGATVAAG RLVVEDGVLK AVWPHSGHYQ PTEENFLDFL SFLRENDVDI TDVKMSPTDE DEFSMYKQRS THMRNHSLEE
401: DLEAEKTVMA DPREEETTPV MNNIETPKKM ESLSIFGDET QSKVTEDYDS EETKESEEVV NIPEESILKR INSKKETKSF QLGKQLSCKW TTGAGPRIGC
501: VRDYPSELQF QALEQVNLSP RCGSVSRLCF SSSSQTQTPQ MSPLWKSLPG DITDS
001: MGVSFSCPFA EQDDVEAALD SVTVKSISFG DDDECKTPKR SVNFNDGTLE PTILKSMGSG KMVVEKSVSL KGMQLERMIS LNRSVKDNGF EIAKEFSVLD
101: PRNPKHEAAI KLQKVYKSFR TRRKLADCAV LVEQSWWKLL DFAELKRSSI SFFDIEKHET AISRWSRART RAAKVGKGLS KNGKAQKLAL QHWLEAIDPR
201: HRYGHNLHFY YNKWLHCQSR EPFFYWLDIG EGKEVNLVEK CPRLKLQQQC IKYLGPMERK AYEVVVEDGK FFYKHSGEIL QTSDMEDSES KWIFVLSTSK
301: VLYVGKKKKG TFQHSSFLAG GATVAAGRLV VENGVLKAVW PHSGHYQPTE ENFMDFLSFL RENDVDITDV KMSPTDEDEF SIYKQRSTHM RNHSLEEDLE
401: AEKTISFQDK VDPSGEEQTL MRNESISRKQ SDLETPEKME SFSTFGDEIQ SVGSKSTKVS EDYDSGDDEE EEEEMFELEQ ESMPSEQSSP RGEEKEEGET
501: KESEVVKITE ESILKRINSK KETKSFQLGK QLSCKWTTGA GPRIGCVRDY PSELQFQALE QVNLSPRSAS VSRLCFSSSS QTQTPQMSPL WRGMSLPTDI
601: TLTNS
101: PRNPKHEAAI KLQKVYKSFR TRRKLADCAV LVEQSWWKLL DFAELKRSSI SFFDIEKHET AISRWSRART RAAKVGKGLS KNGKAQKLAL QHWLEAIDPR
201: HRYGHNLHFY YNKWLHCQSR EPFFYWLDIG EGKEVNLVEK CPRLKLQQQC IKYLGPMERK AYEVVVEDGK FFYKHSGEIL QTSDMEDSES KWIFVLSTSK
301: VLYVGKKKKG TFQHSSFLAG GATVAAGRLV VENGVLKAVW PHSGHYQPTE ENFMDFLSFL RENDVDITDV KMSPTDEDEF SIYKQRSTHM RNHSLEEDLE
401: AEKTISFQDK VDPSGEEQTL MRNESISRKQ SDLETPEKME SFSTFGDEIQ SVGSKSTKVS EDYDSGDDEE EEEEMFELEQ ESMPSEQSSP RGEEKEEGET
501: KESEVVKITE ESILKRINSK KETKSFQLGK QLSCKWTTGA GPRIGCVRDY PSELQFQALE QVNLSPRSAS VSRLCFSSSS QTQTPQMSPL WRGMSLPTDI
601: TLTNS
Arabidopsis Description
IQM2Calmodulin-binding family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VF87]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.