Factsheet for TraesCS6B01G245100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G197800.1	Wheat	plastid	98.52	98.52
TraesCS6A01G215500.1	Wheat	plastid	97.98	97.98
HORVU6Hr1G054940.1	Barley	plastid	97.85	97.85
Os02t0603800-01	Rice	plastid	93.15	93.15
EES07113	Sorghum	plastid	92.34	92.09
Zm00001d017139_P003	Maize	plastid	92.47	91.49
GSMUA_Achr1P08940_001	Banana	plastid	84.54	84.43
Bra002468.1-P	Field mustard	plastid	77.69	83.29
PGSC0003DMT400020795	Potato	cytosol, plastid	81.72	82.16
Solyc11g069380.1.1	Tomato	plastid	81.72	82.16
KRH26422	Soybean	nucleus, plastid	81.32	81.65
VIT_06s0004g02900.t01	Wine grape	plastid	81.18	81.62
CDY53637	Canola	plastid	80.38	81.25
KRH22900	Soybean	nucleus	80.91	81.13
AT5G60600.1	Thale cress	plastid	80.24	80.57
CDY31531	Canola	plastid	80.11	80.43
CDY53636	Canola	cytosol	18.95	77.05

Protein Annotations

KEGG:00900+1.17.7.3	Gene3D:3.20.20.20	Gene3D:3.30.413.10	MapMan:9.1.2.7	ncoils:Coil	InterPro:Dihydropteroate_synth-like
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0008299	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009605	GO:GO:0009607	GO:GO:0009617	GO:GO:0009719	GO:GO:0009862
GO:GO:0009941	GO:GO:0009987	GO:GO:0016114	GO:GO:0044237	GO:GO:0046429	GO:GO:0051539
GO:GO:0055114	InterPro:IPR011005	InterPro:IspG_atypical	InterPro:IspG_bac-typ	HAMAP:MF_00159	PFAM:PF04551
PIRSF:PIRSF037336	PANTHER:PTHR30454	SUPFAM:SSF56014	TIGRFAMs:TIGR00612	EnsemblPlantsGene:TraesCS6B01G245100	EnsemblPlants:TraesCS6B01G245100.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6B:-:437480291..437486873

Molecular Weight (calculated)

81515.3 Da

IEP (calculated)

6.288

GRAVY (calculated)

-0.195

Length

744 amino acids

Sequence
(BLAST)

001: MATGVAPAPL PHVKVRGGGI GLTKSVDFAK VLSVPGALRT GSSRGRALVV RSSSTESDTM ELEPASEGSP LLVPRQKYCE SIHQTRRRKT RTVMVGNVAL
101: GSDHPMRIQT MTTSDTKDVA KTVEEVMRIA DKGADFVRIT VQGKKEADAC FEIKNTLVQK NYNIPLVADI HFAPTVALRV AECFDKIRVN PGNFADRRAQ
201: FEKLEYTEDD YEKELEHIEK VFSPLVEKCK KYGRAMRIGT NHGSLSDRIM SYYGDSPRGM VESALEFARI CRNLDFHNFV FSMKASNPVV MVQAYRLLVA
301: EMYNLGWDYP LHLGVTEAGE GEDGRMKSAI GIGTLLMDGL GDTIRVSLTE PPEEEIDPCR RLANLGTQAA NLQIGVAPFE EKHRRYFDFQ RRSGQLPLQK
401: EGEAVDYRGV LHRDGSVLMS VSLDQLKAPE LLYRSLAAKL IVGMPFKDLA TVDSILLREL PPVXXXXXRL ALKRLVDISM GVLTPLSEQL TKPLPHAIVL
501: VTLDELSSDA NKLLPEGTRF AVTLRGDESY EQLDVLKSVD NITMLLHNVP YGEEKTGRVH AARRLFEYLE TNGLNFPVIH HIDFPKSIDR DGLVIGAGSN
601: VGALLVDGLG DGVLLEAANQ EFEFLRDTSF NLLQGCRMRN TKTEYVSCPS CGRTLFDLQE ISAQIREKTS HLPGVSIAIM GCIVNGPGEM ADADFGYVGG
701: APGKIDLYVG KTVVQRGIAM EGATEALIQL IKDHGRWVDP PTEE

Best Arabidopsis Sequence Match ( AT5G60600.1 )
(BLAST)

001: MATGVLPAPV SGIKIPDSKV GFGKSMNLVR ICDVRSLRSA RRRVSVIRNS NQGSDLAELQ PASEGSPLLV PRQKYCESLH KTVRRKTRTV MVGNVALGSE
101: HPIRIQTMTT SDTKDITGTV DEVMRIADKG ADIVRITVQG KKEADACFEI KDKLVQLNYN IPLVADIHFA PTVALRVAEC FDKIRVNPGN FADRRAQFET
201: IDYTEDEYQK ELQHIEQVFT PLVEKCKKYG RAMRIGTNHG SLSDRIMSYY GDSPRGMVES AFEFARICRK LDYHNFVFSM KASNPVIMVQ AYRLLVAEMY
301: VHGWDYPLHL GVTEAGEGED GRMKSAIGIG TLLQDGLGDT IRVSLTEPPE EEIDPCRRLA NLGTKAAKLQ QGVAPFEEKH RHYFDFQRRT GDLPVQKEGE
401: EVDYRNVLHR DGSVLMSISL DQLKAPELLY RSLATKLVVG MPFKDLATVD SILLRELPPV DDQVARLALK RLIDVSMGVI APLSEQLTKP LPNAMVLVNL
501: KELSGGAYKL LPEGTRLVVS LRGDEPYEEL EILKNIDATM ILHDVPFTED KVSRVHAARR LFEFLSENSV NFPVIHHINF PTGIHRDELV IHAGTYAGGL
601: LVDGLGDGVM LEAPDQDFDF LRNTSFNLLQ GCRMRNTKTE YVSCPSCGRT LFDLQEISAE IREKTSHLPG VSIAIMGCIV NGPGEMADAD FGYVGGSPGK
701: IDLYVGKTVV KRGIAMTEAT DALIGLIKEH GRWVDPPVAD E

Arabidopsis Description

ISPG4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4K0E8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.