CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017139_P003	Maize	plastid	96.92	96.14
Os02t0603800-01	Rice	plastid	93.57	93.82
TraesCS6A01G215500.1	Wheat	plastid	92.63	92.88
TraesCS6D01G197800.1	Wheat	plastid	92.49	92.74
HORVU6Hr1G054940.1	Barley	plastid	92.49	92.74
TraesCS6B01G245100.1	Wheat	plastid	92.09	92.34
GSMUA_Achr1P08940_001	Banana	plastid	84.99	85.1
Bra002468.1-P	Field mustard	plastid	78.55	84.44
CDY53637	Canola	plastid	81.23	82.34
VIT_06s0004g02900.t01	Wine grape	plastid	81.64	82.3
PGSC0003DMT400020795	Potato	cytosol, plastid	81.23	81.89
Solyc11g069380.1.1	Tomato	plastid	81.23	81.89
KRH26422	Soybean	nucleus, plastid	81.1	81.65
AT5G60600.1	Thale cress	plastid	81.1	81.65
KRH22900	Soybean	nucleus	80.83	81.27
CDY31531	Canola	plastid	80.7	81.24
CDY53636	Canola	cytosol	19.03	77.6

Protein Annotations

KEGG:00900+1.17.7.3	Gene3D:3.20.20.20	Gene3D:3.30.413.10	EntrezGene:8072432	MapMan:9.1.2.7	UniProt:C5XX72
InterPro:Dihydropteroate_synth-like	EnsemblPlants:EES07113	ProteinID:EES07113	ProteinID:EES07113.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006629	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0008299	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009605
GO:GO:0009607	GO:GO:0009617	GO:GO:0009719	GO:GO:0009862	GO:GO:0009941	GO:GO:0009987
GO:GO:0016114	GO:GO:0019288	GO:GO:0044237	GO:GO:0046429	GO:GO:0051539	GO:GO:0055114
InterPro:IPR011005	InterPro:IspG_atypical	InterPro:IspG_bac-typ	HAMAP:MF_00159	PFAM:PF04551	PIRSF:PIRSF037336
EnsemblPlantsGene:SORBI_3004G207400	SUPFAM:SSF56014	unigene:Sbi.2936	TIGRFAMs:TIGR00612	UniParc:UPI0001A85E46	RefSeq:XP_002454137.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:55773753..55780327

Molecular Weight (calculated)

82125.7 Da

IEP (calculated)

5.575

GRAVY (calculated)

-0.216

Length

746 amino acids

Sequence
(BLAST)

001: MATGVAPASL PHVRVRDGGV GFTRSVDFAK VLSTPSAGTM RTSSSRGRAL VAKSSSTGSE TVELEPSSEG SPLLVPRQKY CESIHQTRRR KTRTVMVGNV
101: PLGSDHPIRI QTMTTSDTKD VAKTVEEVMR IADKGADIVR ITVQGRKEAD ACFEIKDTLV QKNYNIPLVA DIHFAPTVAL RVAECFDKIR VNPGNFADRR
201: AQFEKLEYTD DDYQKELEHI EKVFSPLVEK CKQYGRAMRI GTNHGSLSDR IMSYYGDSPR GMVESALEFA RICRKLDYHN FVFSMKASNP VVMVQAYRLL
301: VAEMYNLGWD YPLHLGVTEA GEGEDGRMKS AIGIGTLLMD GLGDTIRVSL TEPPEEEIDP CQRLANLGAQ AANLQIGVAP FEEKHRRYFD FQRRSGQLPL
401: QKEGEEVDYR NVLHRDGSVL MSVSLDQLKA PELLYRSLAA KLVVGMPFKD LATVDSILLR ELPPVEDAEA RLALKRLVDI GMGVLTPLSE QLTKPLPHAI
501: VLVNLDELSS GAHKLLPEGT RLAVTLRGDE SYEQLDILKD VDDITMLLHN VPYGEEKTGR VHAARRLFEY LQASGLNFPV IHHIDFPKAI DRDGLVIGAG
601: ANVGALLVDG LGDGVLLEAA DQEFEFLRDT SFNLLQGCRM RNTKTEYVSC PSCGRTLFDL QEISAEIREK TSHLPGVSIA IMGCIVNGPG EMADADFGYV
701: GGAPGKIDLY VGKTVVQRGI AMEGATDALI QLIKDNGRWV DPPAEE

Best Arabidopsis Sequence Match ( AT5G60600.1 )
(BLAST)

001: MATGVLPAPV SGIKIPDSKV GFGKSMNLVR ICDVRSLRSA RRRVSVIRNS NQGSDLAELQ PASEGSPLLV PRQKYCESLH KTVRRKTRTV MVGNVALGSE
101: HPIRIQTMTT SDTKDITGTV DEVMRIADKG ADIVRITVQG KKEADACFEI KDKLVQLNYN IPLVADIHFA PTVALRVAEC FDKIRVNPGN FADRRAQFET
201: IDYTEDEYQK ELQHIEQVFT PLVEKCKKYG RAMRIGTNHG SLSDRIMSYY GDSPRGMVES AFEFARICRK LDYHNFVFSM KASNPVIMVQ AYRLLVAEMY
301: VHGWDYPLHL GVTEAGEGED GRMKSAIGIG TLLQDGLGDT IRVSLTEPPE EEIDPCRRLA NLGTKAAKLQ QGVAPFEEKH RHYFDFQRRT GDLPVQKEGE
401: EVDYRNVLHR DGSVLMSISL DQLKAPELLY RSLATKLVVG MPFKDLATVD SILLRELPPV DDQVARLALK RLIDVSMGVI APLSEQLTKP LPNAMVLVNL
501: KELSGGAYKL LPEGTRLVVS LRGDEPYEEL EILKNIDATM ILHDVPFTED KVSRVHAARR LFEFLSENSV NFPVIHHINF PTGIHRDELV IHAGTYAGGL
601: LVDGLGDGVM LEAPDQDFDF LRNTSFNLLQ GCRMRNTKTE YVSCPSCGRT LFDLQEISAE IREKTSHLPG VSIAIMGCIV NGPGEMADAD FGYVGGSPGK
701: IDLYVGKTVV KRGIAMTEAT DALIGLIKEH GRWVDPPVAD E

Arabidopsis Description

ISPG4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4K0E8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.