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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, plastid
BaCelLo:plastid
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:cytosol
YLoc:plastid
 plastid: 17189339
plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 17189339 doi
T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky
Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES07113 Sorghum plastid 93.82 93.57
TraesCS6D01G197800.1 Wheat plastid 93.28 93.28
TraesCS6A01G215500.1 Wheat plastid 93.28 93.28
HORVU6Hr1G054940.1 Barley plastid 93.28 93.28
TraesCS6B01G245100.1 Wheat plastid 93.15 93.15
Zm00001d017139_P003 Maize plastid 94.09 93.09
GSMUA_Achr1P08940_001 Banana plastid 84.54 84.43
Bra002468.1-P Field mustard plastid 78.36 84.01
VIT_06s0004g02900.t01 Wine grape plastid 82.39 82.84
Solyc11g069380.1.1 Tomato plastid 82.12 82.57
PGSC0003DMT400020795 Potato cytosol, plastid 81.99 82.43
KRH26422 Soybean nucleus, plastid 81.99 82.32
CDY53637 Canola plastid 81.32 82.2
KRH22900 Soybean nucleus 81.72 81.94
AT5G60600.1 Thale cress plastid 81.18 81.51
CDY31531 Canola plastid 81.05 81.38
CDY53636 Canola cytosol 18.95 77.05
Protein Annotations
KEGG:00900+1.17.7.3Gene3D:3.20.20.20Gene3D:3.30.413.10EntrezGene:4329911MapMan:9.1.2.7EMBL:AK120769
EMBL:AY224457ProteinID:BAD19354.1ProteinID:BAF09279.1ProteinID:BAS79642.1InterPro:Dihydropteroate_synth-likeProteinID:EEE57327.1
GO:GO:0003674GO:GO:0003824GO:GO:0003848GO:GO:0003864GO:GO:0004068GO:GO:0004347
GO:GO:0004592GO:GO:0005488GO:GO:0005506GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005975GO:GO:0006091GO:GO:0006094GO:GO:0006096GO:GO:0006139
GO:GO:0006523GO:GO:0006629GO:GO:0006810GO:GO:0006950GO:GO:0007154GO:GO:0007165
GO:GO:0008150GO:GO:0008152GO:GO:0008299GO:GO:0009056GO:GO:0009058GO:GO:0009396
GO:GO:0009507GO:GO:0009536GO:GO:0009570GO:GO:0009605GO:GO:0009607GO:GO:0009617
GO:GO:0009719GO:GO:0009862GO:GO:0009941GO:GO:0009987GO:GO:0015940GO:GO:0016020
GO:GO:0016021GO:GO:0016114GO:GO:0016491GO:GO:0016740GO:GO:0016787GO:GO:0016810
GO:GO:0019288GO:GO:0044237GO:GO:0046429GO:GO:0046872GO:GO:0051536GO:GO:0051539
GO:GO:0055085GO:GO:0055114InterPro:IPR011005InterPro:IspG_atypicalInterPro:IspG_bac-typHAMAP:MF_00159
EnsemblPlantsGene:Os02g0603800EnsemblPlants:Os02t0603800-01PFAM:PF04551PIRSF:PIRSF037336UniProt:Q6K8J4SUPFAM:SSF56014
TIGRFAMs:TIGR00612UniParc:UPI0000375831RefSeq:XP_015625724.1SEG:seg::
Description
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, HMBDP synthaseSimilar to Isoprenoid biosynthesis-like protein (Fragment). (Os02t0603800-01)
Coordinates
chr2:-:23653493..23659174
Molecular Weight (calculated)
82165.9 Da
IEP (calculated)
5.766
GRAVY (calculated)
-0.201
Length
744 amino acids
Sequence
(BLAST)
001: MATGVAPAPL PHVRVRDGGI GFTRSVDFAK ILSVPATLRV GSSRGRVLVA KSSSTGSDTM ELEPSSEGSP LLVPRQKYCE SIYETRRRKT RTVMVGNVPL
101: GSDHPIRIQT MTTSDTKDVA KTVEEVMRIA DKGADFVRIT VQGRKEADAC FEIKNTLVQK NYNIPLVADI HFAPTVALRV AECFDKIRVN PGNFADRRAQ
201: FEQLEYTEDD YQKELEHIEK VFSPLVEKCK QYGRAMRIGT NHGSLSDRIM SYYGDSPRGM VESALEFARI CRKLDFHNFV FSMKASNPVI MVQAYRLLVA
301: EMYNLGWDYP LHLGVTEAGE GEDGRMKSAI GIGTLLMDGL GDTIRVSLTE PPEEEIDPCR RLANLGTHAA DLQIGVAPFE EKHRRYFDFQ RRSGQLPLQK
401: EGEEVDYRGV LHRDGSVLMS VSLDQLKAPE LLYRSLAAKL VVGMPFKDLA TVDSILLREL PPVEDAQARL ALKRLVDISM GVLTPLSEQL TKPLPHAIAL
501: VNVDELSSGA HKLLPEGTRL AVTLRGDESY EQLDLLKGVD DITMLLHSVP YGEEKTGRVH AARRLFEYLE TNGLNFPVIH HIEFPKSVNR DDLVIGAGAN
601: VGALLVDGLG DGVLLEAADQ EFEFLRDTSF NLLQGCRMRN TKTEYVSCPS CGRTLFDLQE VSAQIREKTS HLPGVSIAIM GCIVNGPGEM ADADFGYVGG
701: APGKIDLYVG KTVVQRGIAM EGATDALIQL IKDHGRWVDP PVEE
Best Arabidopsis Sequence Match ( AT5G60600.1 )
(BLAST)
001: MATGVLPAPV SGIKIPDSKV GFGKSMNLVR ICDVRSLRSA RRRVSVIRNS NQGSDLAELQ PASEGSPLLV PRQKYCESLH KTVRRKTRTV MVGNVALGSE
101: HPIRIQTMTT SDTKDITGTV DEVMRIADKG ADIVRITVQG KKEADACFEI KDKLVQLNYN IPLVADIHFA PTVALRVAEC FDKIRVNPGN FADRRAQFET
201: IDYTEDEYQK ELQHIEQVFT PLVEKCKKYG RAMRIGTNHG SLSDRIMSYY GDSPRGMVES AFEFARICRK LDYHNFVFSM KASNPVIMVQ AYRLLVAEMY
301: VHGWDYPLHL GVTEAGEGED GRMKSAIGIG TLLQDGLGDT IRVSLTEPPE EEIDPCRRLA NLGTKAAKLQ QGVAPFEEKH RHYFDFQRRT GDLPVQKEGE
401: EVDYRNVLHR DGSVLMSISL DQLKAPELLY RSLATKLVVG MPFKDLATVD SILLRELPPV DDQVARLALK RLIDVSMGVI APLSEQLTKP LPNAMVLVNL
501: KELSGGAYKL LPEGTRLVVS LRGDEPYEEL EILKNIDATM ILHDVPFTED KVSRVHAARR LFEFLSENSV NFPVIHHINF PTGIHRDELV IHAGTYAGGL
601: LVDGLGDGVM LEAPDQDFDF LRNTSFNLLQ GCRMRNTKTE YVSCPSCGRT LFDLQEISAE IREKTSHLPG VSIAIMGCIV NGPGEMADAD FGYVGGSPGK
701: IDLYVGKTVV KRGIAMTEAT DALIGLIKEH GRWVDPPVAD E
Arabidopsis Description
ISPG4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4K0E8]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.