Factsheet for PGSC0003DMT400020795

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g069380.1.1	Tomato	plastid	97.84	97.84
VIT_06s0004g02900.t01	Wine grape	plastid	87.57	87.57
KRH26422	Soybean	nucleus, plastid	86.62	86.5
Bra002468.1-P	Field mustard	plastid	80.41	85.73
KRH22900	Soybean	nucleus	85.95	85.71
CDY53637	Canola	plastid	83.51	83.97
GSMUA_Achr1P08940_001	Banana	plastid	84.32	83.76
AT5G60600.1	Thale cress	plastid	83.65	83.54
CDY31531	Canola	plastid	83.65	83.54
TraesCS6A01G215500.1	Wheat	plastid	82.57	82.12
Os02t0603800-01	Rice	plastid	82.43	81.99
TraesCS6B01G245100.1	Wheat	plastid	82.16	81.72
HORVU6Hr1G054940.1	Barley	plastid	82.03	81.59
TraesCS6D01G197800.1	Wheat	plastid	82.03	81.59
EES07113	Sorghum	plastid	81.89	81.23
Zm00001d017139_P003	Maize	plastid	81.89	80.59
CDY53636	Canola	cytosol	19.19	77.6

Protein Annotations

KEGG:00900+1.17.7.3	EntrezGene:102591285	Gene3D:3.20.20.20	Gene3D:3.30.413.10	MapMan:9.1.2.7	ncoils:Coil
InterPro:Dihydropteroate_synth-like	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006950	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0008299	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009605	GO:GO:0009607	GO:GO:0009617	GO:GO:0009719
GO:GO:0009862	GO:GO:0009941	GO:GO:0009987	GO:GO:0016114	GO:GO:0044237	GO:GO:0046429
GO:GO:0051539	GO:GO:0055114	InterPro:IPR011005	InterPro:IspG_atypical	InterPro:IspG_bac-typ	UniProt:M1AE33
HAMAP:MF_00159	PFAM:PF04551	EnsemblPlantsGene:PGSC0003DMG400008050	PGSC:PGSC0003DMG400008050	EnsemblPlants:PGSC0003DMT400020795	PIRSF:PIRSF037336
PANTHER:PTHR30454	SUPFAM:SSF56014	TIGRFAMs:TIGR00612	UniParc:UPI00029499F0	RefSeq:XP_006340201.1	RefSeq:XP_015170680.1
SEG:seg	:	:	:	:	:

Description

GcpE [Source:PGSC_GENE;Acc:PGSC0003DMG400008050]

Coordinates

chr11:-:41712113..41719809

Molecular Weight (calculated)

82094.0 Da

IEP (calculated)

6.045

GRAVY (calculated)

-0.200

Length

740 amino acids

Sequence
(BLAST)

001: MAAGAVPASF TGLKSNENVL GFTKSMNFVR VSDLQRVKFR RTKVSVIRNA IPDQETIELQ PASEGSPLLV PRQKYCESIY KTVRRQTCTV MVGNVALGSE
101: HPIRIQTMTT TDTKDVAATV EQVMKIADAG ADIVRITVQG KKEADACFEI KNTLVQKNYN IPLVADIHFA PSVALRVAEC FDKIRVNPGN FADRRAQFEQ
201: LEYTEDDYQK ELEHIEEVFT PLVEKCKKYG RAMRIGTNHG SLSDRIMSYY GDSPRGMVES AFEFARICRK LDFHNFVFSM KASNPVVMVQ AYRLLVAEMY
301: VQGWDYPLHL GVTEAGEGED GRMKSAIGIG TLLQDGLGDT IRVSLTEAPE EEIDPCRRLA NLGKRAAALQ LGVAPFEEKH RRYFDFQRRS GELPAQKEGD
401: EVDYRGVLHR DGSVLMSVSL NQLKTPELLY RSLAAKLVVG MPFKDLATVD SILLRELPPL DDIDSRLALK RLVDISMGVI APLSEQLTKP LPNAMVLVTL
501: KELSGGAHKL LPEGTRLVVS VRGDESQDEL EILKSSDVTM ILHNLPYTEE KIGRVQAARR LFEYLSENSL NFPVIHHIQF PSNTHRDDLV IGAGTNAGAL
601: LVDGLGDGLL LEAPVKDFDF LRNTSFNLLQ GCRMRNTKTE YVSCPSCGRT LFDLQEISAQ IREKTSHLPG VSIAIMGCIV NGPGEMADAD FGYVGGAPGK
701: IDLYVGKTVV KRAIEMEHAT DALIQLIKDN GRWVDPPTEE

Best Arabidopsis Sequence Match ( AT5G60600.1 )
(BLAST)

001: MATGVLPAPV SGIKIPDSKV GFGKSMNLVR ICDVRSLRSA RRRVSVIRNS NQGSDLAELQ PASEGSPLLV PRQKYCESLH KTVRRKTRTV MVGNVALGSE
101: HPIRIQTMTT SDTKDITGTV DEVMRIADKG ADIVRITVQG KKEADACFEI KDKLVQLNYN IPLVADIHFA PTVALRVAEC FDKIRVNPGN FADRRAQFET
201: IDYTEDEYQK ELQHIEQVFT PLVEKCKKYG RAMRIGTNHG SLSDRIMSYY GDSPRGMVES AFEFARICRK LDYHNFVFSM KASNPVIMVQ AYRLLVAEMY
301: VHGWDYPLHL GVTEAGEGED GRMKSAIGIG TLLQDGLGDT IRVSLTEPPE EEIDPCRRLA NLGTKAAKLQ QGVAPFEEKH RHYFDFQRRT GDLPVQKEGE
401: EVDYRNVLHR DGSVLMSISL DQLKAPELLY RSLATKLVVG MPFKDLATVD SILLRELPPV DDQVARLALK RLIDVSMGVI APLSEQLTKP LPNAMVLVNL
501: KELSGGAYKL LPEGTRLVVS LRGDEPYEEL EILKNIDATM ILHDVPFTED KVSRVHAARR LFEFLSENSV NFPVIHHINF PTGIHRDELV IHAGTYAGGL
601: LVDGLGDGVM LEAPDQDFDF LRNTSFNLLQ GCRMRNTKTE YVSCPSCGRT LFDLQEISAE IREKTSHLPG VSIAIMGCIV NGPGEMADAD FGYVGGSPGK
701: IDLYVGKTVV KRGIAMTEAT DALIGLIKEH GRWVDPPVAD E

Arabidopsis Description

ISPG4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4K0E8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.