Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G197800.1 | Wheat | plastid | 98.12 | 98.12 |
| TraesCS6B01G245100.1 | Wheat | plastid | 97.98 | 97.98 |
| HORVU6Hr1G054940.1 | Barley | plastid | 97.31 | 97.31 |
| Os02t0603800-01 | Rice | plastid | 93.28 | 93.28 |
| EES07113 | Sorghum | plastid | 92.88 | 92.63 |
| Zm00001d017139_P003 | Maize | plastid | 92.74 | 91.76 |
| GSMUA_Achr1P08940_001 | Banana | plastid | 85.08 | 84.97 |
| Bra002468.1-P | Field mustard | plastid | 78.09 | 83.72 |
| PGSC0003DMT400020795 | Potato | cytosol, plastid | 82.12 | 82.57 |
| Solyc11g069380.1.1 | Tomato | plastid | 81.85 | 82.3 |
| KRH26422 | Soybean | nucleus, plastid | 81.72 | 82.05 |
| VIT_06s0004g02900.t01 | Wine grape | plastid | 81.59 | 82.03 |
| CDY53637 | Canola | plastid | 80.78 | 81.66 |
| KRH22900 | Soybean | nucleus | 81.32 | 81.54 |
| CDY31531 | Canola | plastid | 80.51 | 80.84 |
| AT5G60600.1 | Thale cress | plastid | 80.51 | 80.84 |
| CDY53636 | Canola | cytosol | 18.95 | 77.05 |
Protein Annotations
| KEGG:00900+1.17.7.3 | Gene3D:3.20.20.20 | Gene3D:3.30.413.10 | MapMan:9.1.2.7 | ncoils:Coil | InterPro:Dihydropteroate_synth-like |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005506 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006629 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008299 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009570 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009617 | GO:GO:0009719 | GO:GO:0009862 |
| GO:GO:0009941 | GO:GO:0009987 | GO:GO:0016114 | GO:GO:0044237 | GO:GO:0046429 | GO:GO:0051539 |
| GO:GO:0055114 | InterPro:IPR011005 | InterPro:IspG_atypical | InterPro:IspG_bac-typ | HAMAP:MF_00159 | PFAM:PF04551 |
| PIRSF:PIRSF037336 | PANTHER:PTHR30454 | SUPFAM:SSF56014 | TIGRFAMs:TIGR00612 | EnsemblPlantsGene:TraesCS6A01G215500 | EnsemblPlants:TraesCS6A01G215500.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:-:396296438..396301498
Molecular Weight (calculated)
82037.9 Da
IEP (calculated)
6.096
GRAVY (calculated)
-0.205
Length
744 amino acids
Sequence
(BLAST)
(BLAST)
001: MATGMAPAPL SHVKVRGGGI GFTKSVDFAK VLSVPGALRT GSSRGRALVV RSSSTESDTM ELEPASEGSP LLVPRQKYCE SIHQTRRRKT RTVMVGNVAL
101: GSDHPIRIQT MTTSDTKDVA KTVEEVMRIA DKGADFVRIT VQGKKEADAC FEIKNTLVQK NYNIPLVADI HFAPPVALRV AECFDKIRVN PGNFADRRAQ
201: FEKLEYTEDD YEKELEHIEK VFSPLVEKCK KYGRAMRIGT NHGSLSDRIM SYYGDSPRGM VESALEFARI CRNLDFHNFV FSMKASNPVV MVQAYRLLVA
301: EMYNLGWDYP LHLGVTEAGE GEDGRMKSAI GIGTLLMDGL GDTIRVSLTE PPEEEIDPCR RLANLGTQAA NLQIGVAPFE EKHRRYFDFQ RRSGQLPLQK
401: EGEAVDYRGV LHRDGSVLMS VSLDQLKAPE LLYRSLAAKL VVGMPFKDLA TVDSILLREL PPIEDAEARL ALKRLVDISM GVLTPLSEQL TKPLPHAIVL
501: VTLDELSSDA KKLLPEGTRF AVTLRGDESY EQLDVLKSVD NITMLLHNVP YGEEKTGRVH AARRLFEYLE TSGLNFPVIH HIDFPKSIDR DGLVIGAGSN
601: VGALLVDGLG DGVLLEAGNQ EFEFLRDTSF NLLQGCRMRN TKTEYVSCPS CGRTLFDLQE ISAQIREKTS HLPGVSIAIM GCIVNGPGEM ADADFGYVGG
701: APGKIDLYVG KTVVQRGIAM EGATEALIQL IKDHGRWVDP PTEE
101: GSDHPIRIQT MTTSDTKDVA KTVEEVMRIA DKGADFVRIT VQGKKEADAC FEIKNTLVQK NYNIPLVADI HFAPPVALRV AECFDKIRVN PGNFADRRAQ
201: FEKLEYTEDD YEKELEHIEK VFSPLVEKCK KYGRAMRIGT NHGSLSDRIM SYYGDSPRGM VESALEFARI CRNLDFHNFV FSMKASNPVV MVQAYRLLVA
301: EMYNLGWDYP LHLGVTEAGE GEDGRMKSAI GIGTLLMDGL GDTIRVSLTE PPEEEIDPCR RLANLGTQAA NLQIGVAPFE EKHRRYFDFQ RRSGQLPLQK
401: EGEAVDYRGV LHRDGSVLMS VSLDQLKAPE LLYRSLAAKL VVGMPFKDLA TVDSILLREL PPIEDAEARL ALKRLVDISM GVLTPLSEQL TKPLPHAIVL
501: VTLDELSSDA KKLLPEGTRF AVTLRGDESY EQLDVLKSVD NITMLLHNVP YGEEKTGRVH AARRLFEYLE TSGLNFPVIH HIDFPKSIDR DGLVIGAGSN
601: VGALLVDGLG DGVLLEAGNQ EFEFLRDTSF NLLQGCRMRN TKTEYVSCPS CGRTLFDLQE ISAQIREKTS HLPGVSIAIM GCIVNGPGEM ADADFGYVGG
701: APGKIDLYVG KTVVQRGIAM EGATEALIQL IKDHGRWVDP PTEE
001: MATGVLPAPV SGIKIPDSKV GFGKSMNLVR ICDVRSLRSA RRRVSVIRNS NQGSDLAELQ PASEGSPLLV PRQKYCESLH KTVRRKTRTV MVGNVALGSE
101: HPIRIQTMTT SDTKDITGTV DEVMRIADKG ADIVRITVQG KKEADACFEI KDKLVQLNYN IPLVADIHFA PTVALRVAEC FDKIRVNPGN FADRRAQFET
201: IDYTEDEYQK ELQHIEQVFT PLVEKCKKYG RAMRIGTNHG SLSDRIMSYY GDSPRGMVES AFEFARICRK LDYHNFVFSM KASNPVIMVQ AYRLLVAEMY
301: VHGWDYPLHL GVTEAGEGED GRMKSAIGIG TLLQDGLGDT IRVSLTEPPE EEIDPCRRLA NLGTKAAKLQ QGVAPFEEKH RHYFDFQRRT GDLPVQKEGE
401: EVDYRNVLHR DGSVLMSISL DQLKAPELLY RSLATKLVVG MPFKDLATVD SILLRELPPV DDQVARLALK RLIDVSMGVI APLSEQLTKP LPNAMVLVNL
501: KELSGGAYKL LPEGTRLVVS LRGDEPYEEL EILKNIDATM ILHDVPFTED KVSRVHAARR LFEFLSENSV NFPVIHHINF PTGIHRDELV IHAGTYAGGL
601: LVDGLGDGVM LEAPDQDFDF LRNTSFNLLQ GCRMRNTKTE YVSCPSCGRT LFDLQEISAE IREKTSHLPG VSIAIMGCIV NGPGEMADAD FGYVGGSPGK
701: IDLYVGKTVV KRGIAMTEAT DALIGLIKEH GRWVDPPVAD E
101: HPIRIQTMTT SDTKDITGTV DEVMRIADKG ADIVRITVQG KKEADACFEI KDKLVQLNYN IPLVADIHFA PTVALRVAEC FDKIRVNPGN FADRRAQFET
201: IDYTEDEYQK ELQHIEQVFT PLVEKCKKYG RAMRIGTNHG SLSDRIMSYY GDSPRGMVES AFEFARICRK LDYHNFVFSM KASNPVIMVQ AYRLLVAEMY
301: VHGWDYPLHL GVTEAGEGED GRMKSAIGIG TLLQDGLGDT IRVSLTEPPE EEIDPCRRLA NLGTKAAKLQ QGVAPFEEKH RHYFDFQRRT GDLPVQKEGE
401: EVDYRNVLHR DGSVLMSISL DQLKAPELLY RSLATKLVVG MPFKDLATVD SILLRELPPV DDQVARLALK RLIDVSMGVI APLSEQLTKP LPNAMVLVNL
501: KELSGGAYKL LPEGTRLVVS LRGDEPYEEL EILKNIDATM ILHDVPFTED KVSRVHAARR LFEFLSENSV NFPVIHHINF PTGIHRDELV IHAGTYAGGL
601: LVDGLGDGVM LEAPDQDFDF LRNTSFNLLQ GCRMRNTKTE YVSCPSCGRT LFDLQEISAE IREKTSHLPG VSIAIMGCIV NGPGEMADAD FGYVGGSPGK
701: IDLYVGKTVV KRGIAMTEAT DALIGLIKEH GRWVDPPVAD E
Arabidopsis Description
ISPG4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4K0E8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.