CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53637	Canola	plastid	86.89	21.6
CDY31531	Canola	plastid	86.89	21.46
AT5G60600.1	Thale cress	plastid	85.79	21.19
VIT_06s0004g02900.t01	Wine grape	plastid	79.78	19.73
Solyc11g069380.1.1	Tomato	plastid	79.23	19.59
GSMUA_Achr1P08940_001	Banana	plastid	79.23	19.46
KRH26422	Soybean	nucleus, plastid	78.69	19.43
KRH22900	Soybean	nucleus	78.69	19.41
PGSC0003DMT400020795	Potato	cytosol, plastid	77.6	19.19
TraesCS6D01G197800.1	Wheat	plastid	77.6	19.09
EES07113	Sorghum	plastid	77.6	19.03
HORVU6Hr1G054940.1	Barley	plastid	77.05	18.95
Os02t0603800-01	Rice	plastid	77.05	18.95
TraesCS6A01G215500.1	Wheat	plastid	77.05	18.95
TraesCS6B01G245100.1	Wheat	plastid	77.05	18.95
Zm00001d017139_P003	Maize	plastid	77.6	18.88

Protein Annotations

KEGG:00900+1.17.7.3	Gene3D:3.30.413.10	MapMan:9.1.2.7	GO:A0A078IUV0	UniProt:A0A078IUV0	EnsemblPlants:CDY53636
ProteinID:CDY53636	ProteinID:CDY53636.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016114	GO:GO:0046429	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00011112001	InterPro:IspG_bac-typ	PFAM:PF04551	PANTHER:PTHR30454	SUPFAM:SSF56014	UniPathway:UPA00056
UniParc:UPI0004EC9927	SEG:seg	:	:	:	:

Description

BnaC09g53990DBnaC09g53990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUV0]

Coordinates

chrLK033222:-:58208..61222

Molecular Weight (calculated)

19669.6 Da

IEP (calculated)

4.818

GRAVY (calculated)

0.010

Length

183 amino acids

Sequence
(BLAST)

001: MNVAVAVLFA RSPQAARDEL VIHAGTYAGA LLVDGLGDGV MLEAPDQDFE FLRNTSFNLL QGCRMRNTKT EYVSCPSCGR TLFDLQEISA EIREKTSHLP
101: GVSIAIMGCI VNGPGEMADA DFGYVGGSPG KIDLYVGKTV VKRGIAMSEA TDALIGLIKE HDRWVDPPWL MSRFSVSANG KDG

Best Arabidopsis Sequence Match ( AT5G60600.2 )
(BLAST)

001: MATGVLPAPV SGIKIPDSKV GFGKSMNLVR ICDVRSLRSA RRRVSVIRNS NQGSDLAELQ PASEGSPLLV PRQKYCESLH KTVRRKTRTV MVGNVALGSE
101: HPIRIQTMTT SDTKDITGTV DEVMRIADKG ADIVRITVQG KKEADACFEI KDKLVQLNYN IPLVADIHFA PTVALRVAEC FDKIRVNPGN FADRRAQFET
201: IDYTEDEYQK ELQHIEQVFT PLVEKCKKYG RAMRIGTNHG SLSDRIMSYY GDSPRGMVES AFEFARICRK LDYHNFVFSM KASNPVIMVQ AYRLLVAEMY
301: VHGWDYPLHL GVTEAGEGED GRMKSAIGIG TLLQDGLGDT IRVSLTEPPE EEIDPCRRLA NLGTKAAKLQ QGAPFEEKHR HYFDFQRRTG DLPVQKEGEE
401: VDYRNVLHRD GSVLMSISLD QLKAPELLYR SLATKLVVGM PFKDLATVDS ILLRELPPVD DQVARLALKR LIDVSMGVIA PLSEQLTKPL PNAMVLVNLK
501: ELSGGAYKLL PEGTRLVVSL RGDEPYEELE ILKNIDATMI LHDVPFTEDK VSRVHAARRL FEFLSENSVN FPVIHHINFP TGIHRDELVI HAGTYAGGLL
601: VDGLGDGVML EAPDQDFDFL RNTSFNLLQG CRMRNTKTEY VSCPSCGRTL FDLQEISAEI REKTSHLPGV SIAIMGCIVN GPGEMADADF GYVGGSPGKI
701: DLYVGKTVVK RGIAMTEATD ALIGLIKEHG RWVDPPVADE

Arabidopsis Description

ISPG4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4K0E8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.