Factsheet for Solyc11g069380.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
plastid: 26371478
plastid: 28183294
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020795	Potato	cytosol, plastid	97.84	97.84
VIT_06s0004g02900.t01	Wine grape	plastid	87.03	87.03
KRH26422	Soybean	nucleus, plastid	86.49	86.37
KRH22900	Soybean	nucleus	85.81	85.58
Bra002468.1-P	Field mustard	plastid	80.14	85.45
GSMUA_Achr1P08940_001	Banana	plastid	84.46	83.89
CDY53637	Canola	plastid	83.24	83.7
AT5G60600.1	Thale cress	plastid	83.65	83.54
CDY31531	Canola	plastid	83.38	83.27
Os02t0603800-01	Rice	plastid	82.57	82.12
TraesCS6A01G215500.1	Wheat	plastid	82.3	81.85
TraesCS6B01G245100.1	Wheat	plastid	82.16	81.72
HORVU6Hr1G054940.1	Barley	plastid	82.03	81.59
TraesCS6D01G197800.1	Wheat	plastid	82.03	81.59
EES07113	Sorghum	plastid	81.89	81.23
Zm00001d017139_P003	Maize	plastid	82.16	80.85
CDY53636	Canola	cytosol	19.59	79.23

Protein Annotations

KEGG:00900+1.17.7.3	Gene3D:3.20.20.20	Gene3D:3.30.413.10	MapMan:9.1.2.7	EMBL:AF435086	ncoils:Coil
InterPro:Dihydropteroate_synth-like	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0006950	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0008299	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009605	GO:GO:0009607	GO:GO:0009617	GO:GO:0009719
GO:GO:0009862	GO:GO:0009941	GO:GO:0009987	GO:GO:0016114	GO:GO:0019288	GO:GO:0044237
GO:GO:0046429	GO:GO:0051539	GO:GO:0055114	InterPro:IPR011005	InterPro:IspG_atypical	InterPro:IspG_bac-typ
HAMAP:MF_00159	PFAM:PF04551	PIRSF:PIRSF037336	PANTHER:PTHR30454	UniProt:Q8GZR6	SUPFAM:SSF56014
EnsemblPlantsGene:Solyc11g069380.1	EnsemblPlants:Solyc11g069380.1.1	TIGRFAMs:TIGR00612	UniParc:UPI00000ADCBE	SEG:seg	:

Description

GcpE [Source:UniProtKB/TrEMBL;Acc:Q8GZR6]

Coordinates

chr11:+:53979824..53985919

Molecular Weight (calculated)

82234.9 Da

IEP (calculated)

5.993

GRAVY (calculated)

-0.239

Length

740 amino acids

Sequence
(BLAST)

001: MAAGTVPASF TGLKSNENGL GFAKSMNFIR VSDLQRVKFR RTKFSVIRNA NPGQETIELQ PASEGSPLLV PRQKYCESIY KTVRRQTCTV MVGNVALGSE
101: HPIRIQTMTT TDTKDVAATV EQVMKIADAG ADIVRITVQG RKEADACFEI KNTLVQKNYN IPLVADIHFA PSVALRVAEC FDKIRVNPGN FADRRAQFEQ
201: LEYTEDDYQK ELEHIEEVFT PLVEKCKKYG RAMRIGTNHG SLSDRIMSYY GDSPRGMVES AFEFARICRK LDFHNFVFSM KASNPVVMVQ AYRLLVAEMY
301: VQGWDYPLHL GVTEAGEGED GRMKSAIGIG TLLQDGLGDT IRVSLTEAPE EEIDPCRRLA DLGKRAAALQ QGVAPFEEKH RRYFDFQRRS GELPAQKEGD
401: EVDYRGVLHR DGSVLMSVSL NQLKTPELLY RSLAAKLIVG MPFKDLATVD SILLRELPPL DDIDSRLALK RLVDISMGVI APLSEQLTKP LPNAMVLVTL
501: KELSGGAHKL LPEGTRLVVS LRGDESHDEL EILKSSDVTM ILHNLPYTEE KIGRVQAARR LFEYLSENSL NFPVIHHIQF PSNTHRDDLV IGAGTNAGAL
601: LVDGLGDGLL LEAPDKDFDF LRNTSFNLLQ GCRMRNTKTE YVSCPSCGRT LFDLQEISAQ IREKTSHLPG VSIAIMGCIV NGPGEMADAD FGYVGGAPGK
701: IDLYVGKTVV KRAIEMEHAT DALIQLIKDH DRWVDPPTEE

Best Arabidopsis Sequence Match ( AT5G60600.1 )
(BLAST)

001: MATGVLPAPV SGIKIPDSKV GFGKSMNLVR ICDVRSLRSA RRRVSVIRNS NQGSDLAELQ PASEGSPLLV PRQKYCESLH KTVRRKTRTV MVGNVALGSE
101: HPIRIQTMTT SDTKDITGTV DEVMRIADKG ADIVRITVQG KKEADACFEI KDKLVQLNYN IPLVADIHFA PTVALRVAEC FDKIRVNPGN FADRRAQFET
201: IDYTEDEYQK ELQHIEQVFT PLVEKCKKYG RAMRIGTNHG SLSDRIMSYY GDSPRGMVES AFEFARICRK LDYHNFVFSM KASNPVIMVQ AYRLLVAEMY
301: VHGWDYPLHL GVTEAGEGED GRMKSAIGIG TLLQDGLGDT IRVSLTEPPE EEIDPCRRLA NLGTKAAKLQ QGVAPFEEKH RHYFDFQRRT GDLPVQKEGE
401: EVDYRNVLHR DGSVLMSISL DQLKAPELLY RSLATKLVVG MPFKDLATVD SILLRELPPV DDQVARLALK RLIDVSMGVI APLSEQLTKP LPNAMVLVNL
501: KELSGGAYKL LPEGTRLVVS LRGDEPYEEL EILKNIDATM ILHDVPFTED KVSRVHAARR LFEFLSENSV NFPVIHHINF PTGIHRDELV IHAGTYAGGL
601: LVDGLGDGVM LEAPDQDFDF LRNTSFNLLQ GCRMRNTKTE YVSCPSCGRT LFDLQEISAE IREKTSHLPG VSIAIMGCIV NGPGEMADAD FGYVGGSPGK
701: IDLYVGKTVV KRGIAMTEAT DALIGLIKEH GRWVDPPVAD E

Arabidopsis Description

ISPG4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4K0E8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.