Factsheet for VIT_06s0004g02900.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26422	Soybean	nucleus, plastid	89.05	88.93
KRH22900	Soybean	nucleus	89.05	88.81
Bra002468.1-P	Field mustard	plastid	82.3	87.75
PGSC0003DMT400020795	Potato	cytosol, plastid	87.57	87.57
Solyc11g069380.1.1	Tomato	plastid	87.03	87.03
CDY53637	Canola	plastid	85.81	86.28
AT5G60600.1	Thale cress	plastid	85.95	85.83
CDY31531	Canola	plastid	85.81	85.69
GSMUA_Achr1P08940_001	Banana	plastid	86.08	85.5
Os02t0603800-01	Rice	plastid	82.84	82.39
EES07113	Sorghum	plastid	82.3	81.64
TraesCS6A01G215500.1	Wheat	plastid	82.03	81.59
HORVU6Hr1G054940.1	Barley	plastid	81.62	81.18
TraesCS6B01G245100.1	Wheat	plastid	81.62	81.18
TraesCS6D01G197800.1	Wheat	plastid	81.49	81.05
Zm00001d017139_P003	Maize	plastid	81.76	80.45
CDY53636	Canola	cytosol	19.73	79.78

Protein Annotations

KEGG:00900+1.17.7.3	EntrezGene:100257071	wikigene:100257071	Gene3D:3.20.20.20	Gene3D:3.30.413.10	MapMan:9.1.2.7
EMBL:AM453980	ProteinID:CAN72185	ProteinID:CAN72185.1	ProteinID:CBI16309	ProteinID:CBI16309.3	UniProt:D7SKY1
InterPro:Dihydropteroate_synth-like	EMBL:FN594951	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0008299	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016114	GO:GO:0019288	GO:GO:0044237	GO:GO:0046429	GO:GO:0055114	InterPro:IPR011005
InterPro:IspG_atypical	InterPro:IspG_bac-typ	EntrezGene:LOC100257071	wikigene:LOC100257071	HAMAP:MF_00159	PFAM:PF04551
PIRSF:PIRSF037336	PANTHER:PTHR30454	SUPFAM:SSF56014	TIGR:TC52504	TIGRFAMs:TIGR00612	UniParc:UPI00015C7EF5
ArrayExpress:VIT_06s0004g02900	EnsemblPlantsGene:VIT_06s0004g02900	EnsemblPlants:VIT_06s0004g02900.t01	unigene:Vvi.4575	RefSeq:XP_002285130	RefSeq:XP_002285130.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:3628878..3636663

Molecular Weight (calculated)

82350.2 Da

IEP (calculated)

6.254

GRAVY (calculated)

-0.255

Length

740 amino acids

Sequence
(BLAST)

001: MATGSVPTSF SGLRRMDCNL GSSKSVDFVR VSDMQRITYG RRKVSVIRNS NPSSDIAELQ ASSEGSPLLV PRQKYCESIH KTVRRKTRTV MVGNVALGSE
101: HPIRIQTMTT TDTKDVAATV EQVMKIADKG ADIVRITVQG KREADACFEI KNSLVQKNYN IPLVADIHFA PSVALRVAEC FDKIRVNPGN FADRRAQFEK
201: LEFTDEDYQK ELEHIEQVFT PLVEKCKKYG RAMRIGTNHG SLSDRIMSYY GDSPRGMVES AFEFARICRK LDYHNFVFSM KASNPIIMVQ AYRLLVAEMY
301: VQGWDYPLHL GVTEAGEGED GRMKSAIGIG TLLQDGLGDT IRVSLTEPPE EEIDPCRRLA NLGMKASDIQ QGVAPFEEKH RHYFDFQRRT GQLPVQKEGE
401: EVDYRGVLHR DGSVLMSVSL DQLKTPELFY KSLAAKLVIG MPFKDLATVD SILLRELPPV DDNDARLTLK RLVDVSMGVI TPLSEQLTKP LPNAMALVNL
501: KELSTGAYKL LPEGTRLVVS VRGDEPYEDL EILKEVDATM ILHDLPLTEE KISRVHSARR LFEYLSDNAL NFPVIHHIQF PKGIHRDDLV IGAGTNAGAL
601: LVDGLGDGLL LEAPEQDFDF LRNTSFNLLQ GCRMRNTKTE YVSCPSCGRT LFDLQEISAQ IREKTSHLPG VSIAIMGCIV NGPGEMADAD FGYVGGAPGK
701: IDLYVGKTVV KRGIAMEHAT DALIQLIKDH GRWVDPPAEE

Best Arabidopsis Sequence Match ( AT5G60600.1 )
(BLAST)

001: MATGVLPAPV SGIKIPDSKV GFGKSMNLVR ICDVRSLRSA RRRVSVIRNS NQGSDLAELQ PASEGSPLLV PRQKYCESLH KTVRRKTRTV MVGNVALGSE
101: HPIRIQTMTT SDTKDITGTV DEVMRIADKG ADIVRITVQG KKEADACFEI KDKLVQLNYN IPLVADIHFA PTVALRVAEC FDKIRVNPGN FADRRAQFET
201: IDYTEDEYQK ELQHIEQVFT PLVEKCKKYG RAMRIGTNHG SLSDRIMSYY GDSPRGMVES AFEFARICRK LDYHNFVFSM KASNPVIMVQ AYRLLVAEMY
301: VHGWDYPLHL GVTEAGEGED GRMKSAIGIG TLLQDGLGDT IRVSLTEPPE EEIDPCRRLA NLGTKAAKLQ QGVAPFEEKH RHYFDFQRRT GDLPVQKEGE
401: EVDYRNVLHR DGSVLMSISL DQLKAPELLY RSLATKLVVG MPFKDLATVD SILLRELPPV DDQVARLALK RLIDVSMGVI APLSEQLTKP LPNAMVLVNL
501: KELSGGAYKL LPEGTRLVVS LRGDEPYEEL EILKNIDATM ILHDVPFTED KVSRVHAARR LFEFLSENSV NFPVIHHINF PTGIHRDELV IHAGTYAGGL
601: LVDGLGDGVM LEAPDQDFDF LRNTSFNLLQ GCRMRNTKTE YVSCPSCGRT LFDLQEISAE IREKTSHLPG VSIAIMGCIV NGPGEMADAD FGYVGGSPGK
701: IDLYVGKTVV KRGIAMTEAT DALIGLIKEH GRWVDPPVAD E

Arabidopsis Description

ISPG4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4K0E8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.