CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
plastid 7

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26422	Soybean	nucleus, plastid	97.84	97.98
VIT_06s0004g02900.t01	Wine grape	plastid	88.81	89.05
Bra002468.1-P	Field mustard	plastid	81.94	87.61
CDY53637	Canola	plastid	85.71	86.41
PGSC0003DMT400020795	Potato	cytosol, plastid	85.71	85.95
GSMUA_Achr1P08940_001	Banana	plastid	86.25	85.91
CDY31531	Canola	plastid	85.71	85.83
Solyc11g069380.1.1	Tomato	plastid	85.58	85.81
AT5G60600.1	Thale cress	plastid	85.58	85.69
Os02t0603800-01	Rice	plastid	81.94	81.72
TraesCS6A01G215500.1	Wheat	plastid	81.54	81.32
HORVU6Hr1G054940.1	Barley	plastid	81.4	81.18
TraesCS6D01G197800.1	Wheat	plastid	81.4	81.18
TraesCS6B01G245100.1	Wheat	plastid	81.13	80.91
EES07113	Sorghum	plastid	81.27	80.83
Zm00001d017139_P003	Maize	plastid	81.13	80.05
CDY53636	Canola	cytosol	19.41	78.69

Protein Annotations

KEGG:00900+1.17.7.3	EntrezGene:100801743	Gene3D:3.20.20.20	Gene3D:3.30.413.10	MapMan:9.1.2.7	EMBL:ACUP02008440
InterPro:Dihydropteroate_synth-like	EnsemblPlantsGene:GLYMA_13G326400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150
GO:GO:0008152	GO:GO:0008299	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016114	GO:GO:0019288	GO:GO:0044237	GO:GO:0046429	GO:GO:0055114	UniProt:I1M4L1
InterPro:IPR011005	InterPro:IspG_atypical	InterPro:IspG_bac-typ	ProteinID:KRH22898.1	ProteinID:KRH22899.1	EnsemblPlants:KRH22900
ProteinID:KRH22900	ProteinID:KRH22900.1	HAMAP:MF_00159	PFAM:PF04551	PIRSF:PIRSF037336	PANTHER:PTHR30454
SUPFAM:SSF56014	TIGRFAMs:TIGR00612	UniParc:UPI000233AB07	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr13:-:42138505..42144566

Molecular Weight (calculated)

82428.4 Da

IEP (calculated)

6.343

GRAVY (calculated)

-0.245

Length

742 amino acids

Sequence
(BLAST)

001: MATGAAVPTT FSTLKTWDSS LGFAKNIDFV RVSDMKSMKS SARKRVSIIR NSNPGQDIAE LQPASPGSPL LVPRQKYCES LHKPIRRKTS TVMVGNVAIG
101: SEHPIRIQTM TTTDTKDVAG TVEQVMRIAD KGADIVRITV QGKKEADACF EIKNTLVQKN YNIPLVADIH FAPSVALRVA ECFDKIRVNP GNFADRRAQF
201: ETLEYTEEDY QKELEHIEKV FTPLVEKCKK YGRAMRIGTN HGSLSDRIMS YYGDSPRGMV ESAFEFARIC RKLDYHNFVF SMKASNPVIM VQAYRLLVAE
301: MYVQGWDYPL HLGVTEAGEG EDGRMKSAIG IGTLLQDGLG DTIRVSLTEP PEEEIDPCRR LANLGMRASE LQKGVEPFEE KHRHYFDFQR RSGQLPVQKE
401: GEEVDYRGAL HRDGSVLMSV SLDQLKMPEV LYKSLAAKLI VGMPFKDLAT VDSILLRELP PVDDADARLA LKRLIDISMG VITPLTEQLT KPLPNAMVLV
501: NLKEISTGAY KLLPQGTRLV VSVRGDEPYE ELDILKGVDA TMLLHDLPYT EDRISRVHAA RRLFEYLSDN SLNFPVIHHI QFPNGIHRDD LVIGAGSDAG
601: ALLVDGLGDG LLLEAPDKDF EFIRNTSFNL LQGCRMRNTK TEYVSCPSCG RTLFDLQEVS AQIREKTSHL PGVSIAIMGC IVNGPGEMAD ADFGYVGGTP
701: GKIDLYVGKT VVKRGIAMEH ATNALIDLIK EHGRWVDPPA EE

Best Arabidopsis Sequence Match ( AT5G60600.1 )
(BLAST)

001: MATGVLPAPV SGIKIPDSKV GFGKSMNLVR ICDVRSLRSA RRRVSVIRNS NQGSDLAELQ PASEGSPLLV PRQKYCESLH KTVRRKTRTV MVGNVALGSE
101: HPIRIQTMTT SDTKDITGTV DEVMRIADKG ADIVRITVQG KKEADACFEI KDKLVQLNYN IPLVADIHFA PTVALRVAEC FDKIRVNPGN FADRRAQFET
201: IDYTEDEYQK ELQHIEQVFT PLVEKCKKYG RAMRIGTNHG SLSDRIMSYY GDSPRGMVES AFEFARICRK LDYHNFVFSM KASNPVIMVQ AYRLLVAEMY
301: VHGWDYPLHL GVTEAGEGED GRMKSAIGIG TLLQDGLGDT IRVSLTEPPE EEIDPCRRLA NLGTKAAKLQ QGVAPFEEKH RHYFDFQRRT GDLPVQKEGE
401: EVDYRNVLHR DGSVLMSISL DQLKAPELLY RSLATKLVVG MPFKDLATVD SILLRELPPV DDQVARLALK RLIDVSMGVI APLSEQLTKP LPNAMVLVNL
501: KELSGGAYKL LPEGTRLVVS LRGDEPYEEL EILKNIDATM ILHDVPFTED KVSRVHAARR LFEFLSENSV NFPVIHHINF PTGIHRDELV IHAGTYAGGL
601: LVDGLGDGVM LEAPDQDFDF LRNTSFNLLQ GCRMRNTKTE YVSCPSCGRT LFDLQEISAE IREKTSHLPG VSIAIMGCIV NGPGEMADAD FGYVGGSPGK
701: IDLYVGKTVV KRGIAMTEAT DALIGLIKEH GRWVDPPVAD E

Arabidopsis Description

ISPG4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4K0E8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.