CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002468.1-P	Field mustard	plastid	92.98	99.28
CDY53637	Canola	plastid	97.84	98.51
AT5G60600.1	Thale cress	plastid	96.76	96.76
CDY53636	Canola	cytosol	21.46	86.89
KRH26422	Soybean	nucleus, plastid	86.5	86.5
VIT_06s0004g02900.t01	Wine grape	plastid	85.69	85.81
KRH22900	Soybean	nucleus	85.83	85.71
PGSC0003DMT400020795	Potato	cytosol, plastid	83.54	83.65
Solyc11g069380.1.1	Tomato	plastid	83.27	83.38
GSMUA_Achr1P08940_001	Banana	plastid	83.4	82.95
Os02t0603800-01	Rice	plastid	81.38	81.05
EES07113	Sorghum	plastid	81.24	80.7
HORVU6Hr1G054940.1	Barley	plastid	80.84	80.51
TraesCS6A01G215500.1	Wheat	plastid	80.84	80.51
Zm00001d017139_P003	Maize	plastid	81.65	80.45
TraesCS6D01G197800.1	Wheat	plastid	80.57	80.24
TraesCS6B01G245100.1	Wheat	plastid	80.43	80.11

Protein Annotations

KEGG:00900+1.17.7.3	Gene3D:3.20.20.20	Gene3D:3.30.413.10	MapMan:9.1.2.7	GO:A0A078H1A8	UniProt:A0A078H1A8
EnsemblPlants:CDY31531	ProteinID:CDY31531	ProteinID:CDY31531.1	ncoils:Coil	InterPro:Dihydropteroate_synth-like	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0008299	GO:GO:0009058	GO:GO:0009987	GO:GO:0016114	GO:GO:0044237	GO:GO:0046429
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00047845001	InterPro:IPR011005	InterPro:IspG_atypical	InterPro:IspG_bac-typ	HAMAP:MF_00159
PFAM:PF04551	PIRSF:PIRSF037336	PANTHER:PTHR30454	SUPFAM:SSF56014	TIGRFAMs:TIGR00612	UniPathway:UPA00056
UniParc:UPI0004EE1E2D	SEG:seg	:	:	:	:

Description

BnaA10g13400DBnaA10g13400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H1A8]

Coordinates

chrLK032274:-:120009..124516

Molecular Weight (calculated)

82238.2 Da

IEP (calculated)

6.135

GRAVY (calculated)

-0.196

Length

741 amino acids

Sequence
(BLAST)

001: MATGVLPAPF SGVKISDSKL GFGKSLNIVR ICDLRSLRSA RRRVSVIRNS NQGSDLAELQ PASEGSPLLV PRQKYCESLN KTVRRKTRTV MVGDVALGSE
101: HPIRIQTMTT SDTKDITATV DEVMRIADKG ADIVRITVQG KKEADACFEI KDKLVQLNYN IPLVADIHFA PAVALRVAEC FDKIRVNPGN FADRRAQFET
201: IEYTEDEYQK ELQHIEQVFT PLVEKCKKYG RAMRIGTNHG SLSDRIMSYY GDSPRGMVES AFEFARICRK LDYHNFVFSM KASNPVIMVQ AYRLLVAEMY
301: VHGWDYPLHL GVTEAGEGED GRMKSAIGIG TLLQDGLGDT IRVSLTEPPE EEIDPCKRLA NLGTKAAELQ QGVAPFEEKH RHYFDFQRRT GDLPVQKEGE
401: EVDYRNVLHR DGSVLMTVSL DQLKAPELLY RSLATKLVVG MPFKDLATVD SILLRELPPV DDHVARLALK RLIDVSMGVI APLSEQLTKP LPNAMVLVNL
501: KELSGGAYKL LPDGTRLVVS VRGDEPYEEL EVLKNIDATM ILHDVPFNED KVSRVHAARR LFEFLSENSV NFPVIHHINF PTGIHRDELV IHAGTYAGAL
601: LVDGLGDGVM LEAPDQDFEF LRNTSFNLLQ GCRMRNTKTE YVSCPSCGRT LFDLQEISAE IREKTSHLPG VSIAIMGCIV NGPGEMADAD FGYVGGSPGK
701: IDLYVGKTVV KRGIAMSEAT DALIGLIKEH GRWVDPPVAD E

Best Arabidopsis Sequence Match ( AT5G60600.1 )
(BLAST)

001: MATGVLPAPV SGIKIPDSKV GFGKSMNLVR ICDVRSLRSA RRRVSVIRNS NQGSDLAELQ PASEGSPLLV PRQKYCESLH KTVRRKTRTV MVGNVALGSE
101: HPIRIQTMTT SDTKDITGTV DEVMRIADKG ADIVRITVQG KKEADACFEI KDKLVQLNYN IPLVADIHFA PTVALRVAEC FDKIRVNPGN FADRRAQFET
201: IDYTEDEYQK ELQHIEQVFT PLVEKCKKYG RAMRIGTNHG SLSDRIMSYY GDSPRGMVES AFEFARICRK LDYHNFVFSM KASNPVIMVQ AYRLLVAEMY
301: VHGWDYPLHL GVTEAGEGED GRMKSAIGIG TLLQDGLGDT IRVSLTEPPE EEIDPCRRLA NLGTKAAKLQ QGVAPFEEKH RHYFDFQRRT GDLPVQKEGE
401: EVDYRNVLHR DGSVLMSISL DQLKAPELLY RSLATKLVVG MPFKDLATVD SILLRELPPV DDQVARLALK RLIDVSMGVI APLSEQLTKP LPNAMVLVNL
501: KELSGGAYKL LPEGTRLVVS LRGDEPYEEL EILKNIDATM ILHDVPFTED KVSRVHAARR LFEFLSENSV NFPVIHHINF PTGIHRDELV IHAGTYAGGL
601: LVDGLGDGVM LEAPDQDFDF LRNTSFNLLQ GCRMRNTKTE YVSCPSCGRT LFDLQEISAE IREKTSHLPG VSIAIMGCIV NGPGEMADAD FGYVGGSPGK
701: IDLYVGKTVV KRGIAMTEAT DALIGLIKEH GRWVDPPVAD E

Arabidopsis Description

ISPG4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4K0E8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.