Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d000219_P001 | Maize | cytosol | 59.38 | 85.59 |
| Bra001650.1-P | Field mustard | cytosol | 51.88 | 54.25 |
| CDX82382 | Canola | cytosol | 59.38 | 51.63 |
| Zm00001d024238_P001 | Maize | cytosol | 91.88 | 33.41 |
| Zm00001d006712_P001 | Maize | peroxisome | 31.88 | 29.14 |
| Zm00001d047632_P001 | Maize | plastid | 98.75 | 13.55 |
| Zm00001d028905_P001 | Maize | extracellular | 89.38 | 12.32 |
| Os03t0309200-01 | Rice | nucleus, plasma membrane | 80.62 | 11.52 |
| TraesCS4D01G183400.1 | Wheat | plastid | 81.25 | 11.17 |
| HORVU4Hr1G053400.1 | Barley | plasma membrane | 81.25 | 11.13 |
| TraesCS4B01G182400.1 | Wheat | plastid | 80.62 | 11.06 |
| TraesCS4A01G122500.2 | Wheat | plastid | 80.62 | 11.06 |
| GSMUA_Achr3P08340_001 | Banana | nucleus | 63.12 | 9.27 |
| VIT_05s0077g00940.t01 | Wine grape | cytosol | 61.25 | 8.68 |
| KRH36969 | Soybean | nucleus | 60.62 | 8.53 |
| Solyc05g053410.2.1 | Tomato | nucleus, plastid | 58.12 | 8.3 |
| PGSC0003DMT400069974 | Potato | mitochondrion | 58.12 | 8.27 |
| PGSC0003DMT400061712 | Potato | cytosol, plastid | 58.12 | 8.23 |
| CDX92112 | Canola | cytosol | 58.12 | 8.2 |
| KRH11936 | Soybean | nucleus | 58.75 | 8.18 |
| CDX75900 | Canola | cytosol | 58.75 | 8.14 |
| Solyc01g059870.2.1 | Tomato | cytosol | 57.5 | 8.13 |
| AT2G18790.1 | Thale cress | nucleus | 59.38 | 8.11 |
| Bra022192.1-P | Field mustard | cytosol | 58.12 | 7.8 |
| CDX95888 | Canola | cytosol | 56.88 | 7.79 |
| AT4G16250.1 | Thale cress | plastid | 54.38 | 7.47 |
| Zm00001d034038_P002 | Maize | peroxisome | 30.62 | 4.32 |
| Zm00001d013262_P001 | Maize | nucleus, plastid | 32.5 | 3.79 |
| Zm00001d013402_P005 | Maize | nucleus | 23.12 | 3.27 |
| Zm00001d033799_P001 | Maize | cytosol | 23.12 | 3.27 |
| Zm00001d022520_P001 | Maize | cytosol | 2.5 | 2.74 |
| Zm00001d012117_P001 | Maize | cytosol | 2.5 | 2.74 |
| Zm00001d050162_P001 | Maize | cytosol | 0.62 | 0.72 |
| Zm00001d018728_P001 | Maize | cytosol, mitochondrion | 0.0 | 0.0 |
| Zm00001d008542_P001 | Maize | cytosol | 0.0 | 0.0 |
| CDY42549 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Zm00001d025231_P001 | EnsemblPlants:Zm00001d025231_T001 | EnsemblPlantsGene:Zm00001d025231 | Gene3D:3.30.565.10 | InterPro:HATPase_C | InterPro:HATPase_C_sf |
| InterPro:His_kinase_dom | InterPro:IPR005467 | InterPro:IPR036890 | PANTHER:PTHR43719 | PANTHER:PTHR43719:SF12 | PFAM:PF02518 |
| PFscan:PS50109 | ProteinID:AQK43227.1 | SMART:SM00387 | SUPFAM:SSF55874 | UniParc:UPI00097CD7E6 | UniProt:A0A1Q0XTC6 |
| MapMan:35.1 | : | : | : | : | : |
Description
Phytochrome B
Coordinates
chr10:+:110225535..110226665
Molecular Weight (calculated)
18079.6 Da
IEP (calculated)
4.271
GRAVY (calculated)
-0.196
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MNAVVSQTMS LLRERDLQLI RDIPDEIKDA SAYGDQFRIQ QVLADFLLSM AQSAPSENGW VEIQVRPNVK QNYDGTDTEL FIFTFACPGE GLPTDIVQDM
101: FSNSQWSTQE GVGLSTCRKI LKLMGGEVQY IRESERSFFL IVLELPQPRL AAGRENQLIC
101: FSNSQWSTQE GVGLSTCRKI LKLMGGEVQY IRESERSFFL IVLELPQPRL AAGRENQLIC
0001: MVSGVGGSGG GRGGGRGGEE EPSSSHTPNN RRGGEQAQSS GTKSLRPRSN TESMSKAIQQ YTVDARLHAV FEQSGESGKS FDYSQSLKTT TYGSSVPEQQ
0101: ITAYLSRIQR GGYIQPFGCM IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV AREITLLNPV WIHSKNTGKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG
0301: LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV
0401: VCHHTSSRCI PFPLRYACEF LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA FLYHGKYYPL GVAPSEVQIK
0501: DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE
0601: TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV
0701: SDLIYKENEA TVNKLLSRAL RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF INIQGDYKAI VHSPNPLIPP
0801: IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA
0901: FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF
1001: FLGSVINAIV SQAMFLLRDR GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF AAIRTEFRMA CPGEGLPPEL
1101: VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY
0101: ITAYLSRIQR GGYIQPFGCM IAVDESSFRI IGYSENAREM LGIMPQSVPT LEKPEILAMG TDVRSLFTSS SSILLERAFV AREITLLNPV WIHSKNTGKP
0201: FYAILHRIDV GVVIDLEPAR TEDPALSIAG AVQSQKLAVR AISQLQALPG GDIKLLCDTV VESVRDLTGY DRVMVYKFHE DEHGEVVAES KRDDLEPYIG
0301: LHYPATDIPQ ASRFLFKQNR VRMIVDCNAT PVLVVQDDRL TQSMCLVGST LRAPHGCHSQ YMANMGSIAS LAMAVIINGN EDDGSNVASG RSSMRLWGLV
0401: VCHHTSSRCI PFPLRYACEF LMQAFGLQLN MELQLALQMS EKRVLRTQTL LCDMLLRDSP AGIVTQSPSI MDLVKCDGAA FLYHGKYYPL GVAPSEVQIK
0501: DVVEWLLANH ADSTGLSTDS LGDAGYPGAA ALGDAVCGMA VAYITKRDFL FWFRSHTAKE IKWGGAKHHP EDKDDGQRMH PRSSFQAFLE VVKSRSQPWE
0601: TAEMDAIHSL QLILRDSFKE SEAAMNSKVV DGVVQPCRDM AGEQGIDELG AVAREMVRLI ETATVPIFAV DAGGCINGWN AKIAELTGLS VEEAMGKSLV
0701: SDLIYKENEA TVNKLLSRAL RGDEEKNVEV KLKTFSPELQ GKAVFVVVNA CSSKDYLNNI VGVCFVGQDV TSQKIVMDKF INIQGDYKAI VHSPNPLIPP
0801: IFAADENTCC LEWNMAMEKL TGWSRSEVIG KMIVGEVFGS CCMLKGPDAL TKFMIVLHNA IGGQDTDKFP FPFFDRNGKF VQALLTANKR VSLEGKVIGA
0901: FCFLQIPSPE LQQALAVQRR QDTECFTKAK ELAYICQVIK NPLSGMRFAN SLLEATDLNE DQKQLLETSV SCEKQISRIV GDMDLESIED GSFVLKREEF
1001: FLGSVINAIV SQAMFLLRDR GLQLIRDIPE EIKSIEVFGD QIRIQQLLAE FLLSIIRYAP SQEWVEIHLS QLSKQMADGF AAIRTEFRMA CPGEGLPPEL
1101: VRDMFHSSRW TSPEGLGLSV CRKILKLMNG EVQYIRESER SYFLIILELP VPRKRPLSTA SGSGDMMLMM PY
Arabidopsis Description
PHYBPhytochrome [Source:UniProtKB/TrEMBL;Acc:A0A178W0V4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.