Factsheet for Zm00001d005546_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER98661	Sorghum	plastid	96.86	96.86
Os09t0298200-01	Rice	plastid	89.02	90.8
TraesCS5D01G182600.1	Wheat	plastid	87.45	89.02
TraesCS5B01G175800.1	Wheat	plastid	87.45	89.02
KRH14151	Soybean	cytosol	31.57	87.98
Solyc12g011120.1.1	Tomato	plastid	71.96	83.03
Zm00001d032385_P001	Maize	plastid	83.14	82.01
CDY68655	Canola	plastid	80.2	80.04
VIT_12s0057g01480.t01	Wine grape	plastid	79.8	79.96
CDX86314	Canola	plastid	80.39	79.92
Bra037495.1-P	Field mustard	plastid	80.2	79.88
KRH73984	Soybean	nucleus, plastid	80.59	79.81
Zm00001d050032_P003	Maize	plastid	81.37	78.9
AT5G48300.1	Thale cress	plastid	79.8	78.27
CDY00843	Canola	plastid	79.8	78.27
Bra015135.1-P	Field mustard	plastid	79.61	78.08
CDY27884	Canola	plastid	79.61	78.08
Solyc07g056140.2.1	Tomato	plastid	78.63	76.97
PGSC0003DMT400079823	Potato	cytosol, extracellular, plastid	78.43	76.78
Zm00001d023256_P001	Maize	cytosol	15.1	76.24
GSMUA_Achr1P09400_001	Banana	plastid	78.24	76.0
KRH14152	Soybean	plastid	47.06	74.77
PGSC0003DMT400097320	Potato	plastid	75.49	74.18
Zm00001d025723_P001	Maize	cytosol	45.1	54.12
Zm00001d010157_P001	Maize	plastid	39.22	49.38
Zm00001d033910_P002	Maize	plastid	48.63	47.33
Zm00001d019266_P002	Maize	plastid	47.84	47.2
Zm00001d039131_P007	Maize	plastid	44.31	40.5
Zm00001d044129_P001	Maize	cytosol, nucleus, plastid	43.14	33.43

Protein Annotations

KEGG:00500+2.7.7.27	KEGG:00520+2.7.7.27	Gene3D:2.160.10.10	MapMan:3.2.2.3	Gene3D:3.90.550.10	EntrezGene:542072
InterPro:ADP-Glc_PPase	InterPro:ADP_Glu_pyroP_CS	EMBL:AY032604	EMBL:BT039213	EMBL:BT039697	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0008150
GO:GO:0008152	GO:GO:0008878	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016740	GO:GO:0016779	GO:GO:0019252	InterPro:IPR029044	InterPro:NTP_transferase_dom	InterPro:Nucleotide-diphossugar_trans
ProteinID:ONM21435.1	PFAM:PF00483	ScanProsite:PS00808	ScanProsite:PS00809	ScanProsite:PS00810	PANTHER:PTHR43523
PANTHER:PTHR43523:SF7	UniProt:Q941P2	SUPFAM:SSF51161	SUPFAM:SSF53448	TIGRFAMs:TIGR02091	InterPro:Trimer_LpxA-like_sf
UniParc:UPI00000A57A1	EnsemblPlantsGene:Zm00001d005546	EnsemblPlants:Zm00001d005546_P002	EnsemblPlants:Zm00001d005546_T002	SEG:seg	:

Description

ADP glucose pyrophosphorylase small subunit embryo 1 ADP glucose pyrophosphorylase small subunit embryo 1

Coordinates

chr2:-:178195810..178206466

Molecular Weight (calculated)

55940.1 Da

IEP (calculated)

6.418

GRAVY (calculated)

-0.133

Length

510 amino acids

Sequence
(BLAST)

001: MATAMGAMAA TCMASIPAAA TFPGDLGVGR RRAVVPGWRA GGRRLRATPP ARRPFLFSPK GVSDSRSSQT CLDPDASTSV LGIILGGGAG TRLYPLTKKR
101: AKPAVPLGAN YRLIDIPVSN CLNSNVSKIY VLTQFNSASL NRHLSRAYGN NIAGYKNEGF VEVLAAQQSP ENPNWFQGTA DAVRQYMWLF EEHNIMEFLI
201: LAGDHLYRMD YQKFIQAHRE TDADITVAAL PMDEQRATAF GLMKIDDEGR IVEFAEKPKG EKLRSMMVDT TILGLDPERA KELPYIASMG IYVFSKDVML
301: RLLRENFPAA NDFGSEVIPG ATEIGLRVQA YLYDGYWEDI GTIEAFYNAN LGITKKPVPD FSFYDRSAPI YTQPRYLPPS KVLDADVTDS VIGEGCVIKH
401: CTINHSVVGL RSCISEGAVI EDSLLMGADY YETENDKNVL SETGGIPIGI GKNSHIRKAI IDKNARIGEN VKIINFDNVQ EAVRETEGYF IKSGIVTVIK
501: DALIPSGTII

Best Arabidopsis Sequence Match ( AT5G48300.1 )
(BLAST)

001: MASVSAIGVL KVPPASTSNS TGKATEAVPT RTLSFSSSVT SSDDKISLKS TVSRLCKSVV RRNPIIVSPK AVSDSQNSQT CLDPDASSSV LGIILGGGAG
101: TRLYPLTKKR AKPAVPLGAN YRLIDIPVSN CLNSNISKIY VLTQFNSASL NRHLSRAYAS NMGGYKNEGF VEVLAAQQSP ENPNWFQGTA DAVRQYLWLF
201: EEHNVLEYLI LAGDHLYRMD YEKFIQAHRE TDADITVAAL PMDEQRATAF GLMKIDEEGR IIEFAEKPKG EHLKAMKVDT TILGLDDQRA KEMPFIASMG
301: IYVVSRDVML DLLRNQFPGA NDFGSEVIPG ATSLGLRVQA YLYDGYWEDI GTIEAFYNAN LGITKKPVPD FSFYDRSAPI YTQPRYLPPS KMLDADVTDS
401: VIGEGCVIKN CKIHHSVVGL RSCISEGAII EDSLLMGADY YETATEKSLL SAKGSVPIGI GKNSHIKRAI IDKNARIGDN VKIINSDNVQ EAARETDGYF
501: IKSGIVTVIK DALIPTGTVI

Arabidopsis Description

APS1Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P55228]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.