Factsheet for PGSC0003DMT400079823

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol, plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g056140.2.1	Tomato	plastid	98.66	98.66
KRH14151	Soybean	cytosol	32.82	93.44
VIT_12s0057g01480.t01	Wine grape	plastid	85.99	88.02
Bra015135.1-P	Field mustard	plastid	87.14	87.31
CDY27884	Canola	plastid	87.14	87.31
CDY68655	Canola	plastid	85.6	87.28
CDY00843	Canola	plastid	86.95	87.12
CDX86314	Canola	plastid	85.41	86.74
KRH73984	Soybean	nucleus, plastid	85.6	86.6
Bra037495.1-P	Field mustard	plastid	85.03	86.52
AT5G48300.1	Thale cress	plastid	85.99	86.15
PGSC0003DMT400097320	Potato	plastid	85.03	85.36
Os08t0345800-02	Rice	plastid	82.15	83.27
TraesCS7B01G183300.1	Wheat	plastid	82.15	83.27
KRH14152	Soybean	plastid	51.25	83.18
TraesCS7D01G284900.1	Wheat	plastid	81.96	83.07
HORVU7Hr1G067620.2	Barley	plastid	81.77	82.88
TraesCS7A01G287400.2	Wheat	golgi, plastid	81.38	82.81
GSMUA_Achr1P09400_001	Banana	plastid	82.92	82.29
KXG24924	Sorghum	plastid	80.23	80.85
Zm00001d032385_P001	Maize	plastid	80.23	80.85
Os09t0298200-01	Rice	plastid	76.97	80.2
TraesCS5B01G175800.1	Wheat	plastid	76.39	79.44
TraesCS5D01G182600.1	Wheat	plastid	76.39	79.44
Zm00001d050032_P003	Maize	plastid	79.85	79.09
Zm00001d005546_P002	Maize	plastid	76.78	78.43
EER98661	Sorghum	plastid	76.58	78.24
Zm00001d023256_P001	Maize	cytosol	14.78	76.24
Zm00001d025723_P001	Maize	cytosol	44.15	54.12
PGSC0003DMT400023304	Potato	cytosol, plastid	50.67	51.26
PGSC0003DMT400064936	Potato	cytosol	14.97	50.0
PGSC0003DMT400041215	Potato	plastid	48.37	48.37
PGSC0003DMT400001935	Potato	plastid	42.42	44.2

Protein Annotations

KEGG:00500+2.7.7.27	KEGG:00520+2.7.7.27	PDB:1YP2	PDB:1YP3	PDB:1YP4	Gene3D:2.160.10.10
MapMan:3.2.2.3	Gene3D:3.90.550.10	ProteinID:AAA66057	ProteinID:AAA66057.1	ProteinID:AAO23572	ProteinID:AAO23572.1
ProteinID:ABA81851	ProteinID:ABA81851.1	ProteinID:ABB86247	ProteinID:ABB86247.1	ProteinID:ABB99399	ProteinID:ABB99399.1
InterPro:ADP-Glc_PPase	InterPro:ADP_Glu_pyroP_CS	EMBL:AY186620	ProteinID:CAA38954	ProteinID:CAA38954.1	ProteinID:CAA39181
ProteinID:CAA39181.1	ProteinID:CAA43489	ProteinID:CAA43489.1	ProteinID:CAA65574	ProteinID:CAA65574.1	EMBL:DQ207843
EMBL:DQ284459	EMBL:DQ297414	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0008878
GO:GO:0009058	GO:GO:0009501	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740
GO:GO:0016779	GO:GO:0019252	InterPro:IPR029044	EMBL:L36648	UniProt:M1D2H9	InterPro:NTP_transferase_dom
InterPro:Nucleotide-diphossugar_trans	PFAM:PF00483	EnsemblPlantsGene:PGSC0003DMG400031084	PGSC:PGSC0003DMG400031084	EnsemblPlants:PGSC0003DMT400079823	ScanProsite:PS00808
ScanProsite:PS00809	ScanProsite:PS00810	PANTHER:PTHR43523	PANTHER:PTHR43523:SF9	SUPFAM:SSF51161	SUPFAM:SSF53448
TIGRFAMs:TIGR02091	InterPro:Trimer_LpxA-like_sf	UniParc:UPI0002953EB5	EMBL:X55155	EMBL:X55650	EMBL:X61186
EMBL:X96771	SEG:seg	:	:	:	:

Description

Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400031084]

Coordinates

chr7:+:51451476..51457407

Molecular Weight (calculated)

57229.5 Da

IEP (calculated)

7.190

GRAVY (calculated)

-0.191

Length

521 amino acids

Sequence
(BLAST)

001: MAASIGALKS SPSSNNCINE RRNDSTRAVS SRNLSFSSSH LAGDKLMPIS SLRSQGVRFN VRRSSLIVSP KAVSDSQNSQ TCLDPDASRS VLGIILGGGA
101: GTRLYPLTKK RAKPAVPLGA NYRLIDIPVS NCLNSNISKI YVLTQFNSAS LNRHLSRAYA SNMGGYKNEG FVEVLAAQQS PENPDWFQGT ADAVRQYLWL
201: FEEHTVLEYL ILAGDHLYRM DYEKFIQAHR ETDADITVAA LPMDEKRATA FGLMKIDEEG RIIEFAEKPQ GEQLQAMKVD TTILGLDDKR AKEMPFIASM
301: GIYVISKDVM LNLLRDKFPG ANDFGSEVIP GATSLGMRVQ AYLYDGYWED IGTIEAFYNA NLGITKKPVP DFSFYDRSAP IYTQPRYLPP SKMLDADVTD
401: SVIGEGCVIK NCKIHHSVVG LRSCISEGAI IEDSLLMGAD YYETDADRKL LAAKGSVPIG IGKNCHIKRA IIDKNARIGD NVKIINKDNV QEAARETDGY
501: FIKSGIVTVI KDALIPSGII I

Best Arabidopsis Sequence Match ( AT5G48300.1 )
(BLAST)

001: MASVSAIGVL KVPPASTSNS TGKATEAVPT RTLSFSSSVT SSDDKISLKS TVSRLCKSVV RRNPIIVSPK AVSDSQNSQT CLDPDASSSV LGIILGGGAG
101: TRLYPLTKKR AKPAVPLGAN YRLIDIPVSN CLNSNISKIY VLTQFNSASL NRHLSRAYAS NMGGYKNEGF VEVLAAQQSP ENPNWFQGTA DAVRQYLWLF
201: EEHNVLEYLI LAGDHLYRMD YEKFIQAHRE TDADITVAAL PMDEQRATAF GLMKIDEEGR IIEFAEKPKG EHLKAMKVDT TILGLDDQRA KEMPFIASMG
301: IYVVSRDVML DLLRNQFPGA NDFGSEVIPG ATSLGLRVQA YLYDGYWEDI GTIEAFYNAN LGITKKPVPD FSFYDRSAPI YTQPRYLPPS KMLDADVTDS
401: VIGEGCVIKN CKIHHSVVGL RSCISEGAII EDSLLMGADY YETATEKSLL SAKGSVPIGI GKNSHIKRAI IDKNARIGDN VKIINSDNVQ EAARETDGYF
501: IKSGIVTVIK DALIPTGTVI

Arabidopsis Description

APS1Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P55228]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.