Factsheet for PGSC0003DMT400001935

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g109790.2.1	Tomato	extracellular	97.4	92.94
VIT_03s0038g04570.t01	Wine grape	cytosol	77.8	73.81
KRH51516	Soybean	plastid	72.8	70.13
KRH60824	Soybean	plastid	72.6	69.94
KRH24456	Soybean	plastid	73.0	69.13
KRH29435	Soybean	cytosol	72.8	68.68
Bra033604.1-P	Field mustard	cytosol, plastid	70.6	67.5
AT4G39210.1	Thale cress	plastid	70.2	67.37
AT2G21590.4	Thale cress	plastid	69.6	66.54
CDY15884	Canola	cytosol, plastid	68.4	65.77
Bra030291.1-P	Field mustard	cytosol, plastid	68.4	65.77
CDX99581	Canola	cytosol, plastid	68.4	65.14
PGSC0003DMT400041215	Potato	plastid	67.6	64.88
GSMUA_Achr4P02930_001	Banana	mitochondrion	58.6	64.11
GSMUA_Achr4P10620_001	Banana	mitochondrion, vacuole	59.0	63.85
GSMUA_Achr9P06920_001	Banana	cytosol	65.2	62.81
GSMUA_Achr6P27190_001	Banana	cytosol, nucleus, plastid	65.2	62.21
CDY56761	Canola	endoplasmic reticulum	70.8	59.5
Os05t0580000-01	Rice	plastid	61.6	59.34
HORVU1Hr1G091600.9	Barley	plastid	61.2	58.29
TraesCS1B01G449700.2	Wheat	plastid	61.4	58.14
PGSC0003DMT400023304	Potato	cytosol, plastid	58.2	56.5
CDX72711	Canola	cytosol	70.8	56.01
Zm00001d039131_P007	Maize	plastid	62.2	55.73
Os01t0633100-01	Rice	plastid	56.8	54.83
OQU87201	Sorghum	plastid	55.4	53.58
TraesCS1A01G419600.2	Wheat	plastid	57.8	53.42
TraesCS1D01G427400.2	Wheat	plastid	57.8	53.42
OQU78492	Sorghum	plastid	62.6	46.1
PGSC0003DMT400097320	Potato	plastid	45.0	43.35
PGSC0003DMT400079823	Potato	cytosol, extracellular, plastid	44.2	42.42
Zm00001d044129_P001	Maize	cytosol, nucleus, plastid	54.2	41.19
PGSC0003DMT400064936	Potato	cytosol	12.6	40.38

Protein Annotations

KEGG:00500+2.7.7.27	KEGG:00520+2.7.7.27	Gene3D:2.160.10.10	MapMan:3.2.2.3	Gene3D:3.90.550.10	InterPro:ADP_Glu_pyroP_CS
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005978
GO:GO:0006091	GO:GO:0008150	GO:GO:0008152	GO:GO:0008878	GO:GO:0009058	GO:GO:0009501
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0019252
InterPro:IPR029044	UniProt:M0ZJC9	InterPro:NTP_transferase_dom	InterPro:Nucleotide-diphossugar_trans	PFAM:PF00483	EnsemblPlantsGene:PGSC0003DMG400000735
PGSC:PGSC0003DMG400000735	EnsemblPlants:PGSC0003DMT400001935	ScanProsite:PS00808	ScanProsite:PS00809	ScanProsite:PS00810	PANTHER:PTHR43523
PANTHER:PTHR43523:SF4	SUPFAM:SSF51161	SUPFAM:SSF53448	InterPro:Trimer_LpxA-like_sf	UniParc:UPI000295259C	SEG:seg

Description

Glucose-1-phosphate adenylyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400000735]

Coordinates

chr1:-:86092620..86096598

Molecular Weight (calculated)

55426.6 Da

IEP (calculated)

8.072

GRAVY (calculated)

-0.237

Length

500 amino acids

Sequence
(BLAST)

001: MDTCCVPMKS TVHLGRVSTG GFNNGEKEFF GEKIRGSLNS NLRINQLSKS LKLEKKENKI KPGVAYSVIT TENDTQTVFV DMPRLERRRA NPKDVAAVIL
101: GGGEGTKLFP LTSRTATPAV PVGGCYRLID IPMSNCINSA INKIFVLTQY NSAPLNRHIA RTYFGNGVSF GDGFVEVLAA TQTPGEAGKK WFQGTADAVR
201: KFIWVFEDAK NKNIENIVVL SGDHLYRMDY MELVQNHIDR NADITLSCAP AEDSRASDFG LVKIDSRGRV VQFAEKPKGF DLKAMQVDTT LVGLSPQDAK
301: KSPYIASMGV YVFKTDVLLK LLKWSYPTSN DFGSEIIPAA IDDYNVQFPE FQFYDPKTPF YTSPRFLPPT KIDNCKIKDA IISHGCFLRD CSVEHSIVGE
401: RSRLDCGVEL KDTFMMGADY YQTESEIASL LAEGKVPIGI GENTKIRKCI IDKNAKIGKN VSIINKDGVQ EADRPEEGFY IRSGIIIILE KATIRDGTVI

Best Arabidopsis Sequence Match ( AT4G39210.1 )
(BLAST)

001: MDSCCNFSLG TKTVLAKDSF KNVENKFLGE KIKGSVLKPF SSDLSSKKFR NRKLRPGVAY AIATSKNAKE ALKNQPSMFE RRRADPKNVA AIILGGGDGA
101: KLFPLTKRAA TPAVPVGGCY RMIDIPMSNC INSCINKIFV LTQFNSASLN RHLARTYFGN GINFGDGFVE VLAATQTPGE AGKKWFQGTA DAVRKFLWVF
201: EDAKNRNIEN IIILSGDHLY RMNYMDFVQH HVDSKADITL SCAPVDESRA SEYGLVNIDR SGRVVHFSEK PTGIDLKSMQ TDTTMHGLSH QEAAKSPYIA
301: SMGVYCFKTE ALLKLLTWRY PSSNDFGSEI IPAAIKDHNV QGYIYRDYWE DIGTIKSFYE ANIALVEEHP KFEFYDQNTP FYTSPRFLPP TKTEKCRIVN
401: SVISHGCFLG ECSIQRSIIG ERSRLDYGVE LQDTLMLGAD SYQTESEIAS LLAEGNVPIG IGRDTKIRKC IIDKNAKIGK NVVIMNKDDV KEADRPEEGF
501: YIRSGITVVV EKATIKDGTV I

Arabidopsis Description

APL3Glucose-1-phosphate adenylyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A178US50]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.