CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15884	Canola	cytosol, plastid	96.95	97.88
AT2G21590.4	Thale cress	plastid	90.86	91.2
CDY56761	Canola	endoplasmic reticulum	83.24	73.45
KRH24456	Soybean	plastid	71.05	70.64
KRH60824	Soybean	plastid	69.71	70.52
KRH51516	Soybean	plastid	69.71	70.52
KRH29435	Soybean	cytosol	71.05	70.38
CDX72711	Canola	cytosol	83.24	69.15
Solyc01g109790.2.1	Tomato	extracellular	68.95	69.08
VIT_03s0038g04570.t01	Wine grape	cytosol	69.14	68.88
CDY41275	Canola	cytosol	42.1	68.63
PGSC0003DMT400001935	Potato	plastid	65.14	68.4
GSMUA_Achr4P02930_001	Banana	mitochondrion	58.67	67.4
GSMUA_Achr4P10620_001	Banana	mitochondrion, vacuole	57.9	65.8
CDY27626	Canola	plastid	63.24	64.22
CDX84911	Canola	plastid	62.29	64.12
GSMUA_Achr9P06920_001	Banana	cytosol	62.29	63.01
GSMUA_Achr6P27190_001	Banana	cytosol, nucleus, plastid	61.33	61.45
Os05t0580000-01	Rice	plastid	57.71	58.38
CDX92546	Canola	plastid	57.33	58.33
CDY68209	Canola	plastid	57.14	58.14
HORVU1Hr1G091600.9	Barley	plastid	57.71	57.71
TraesCS1B01G449700.2	Wheat	plastid	57.9	57.58
CDY02573	Canola	plastid	56.57	57.56
Zm00001d039131_P007	Maize	plastid	58.86	55.38
OQU87201	Sorghum	plastid	53.9	54.74
CDY47206	Canola	plastid	56.38	54.71
Os01t0633100-01	Rice	plastid	53.71	54.44
TraesCS1D01G427400.2	Wheat	plastid	54.29	52.68
TraesCS1A01G419600.2	Wheat	plastid	54.29	52.68
CDY68655	Canola	plastid	46.48	47.75
CDY00843	Canola	plastid	47.24	47.69
CDY27884	Canola	plastid	47.24	47.69
CDX86314	Canola	plastid	46.48	47.56
OQU78492	Sorghum	plastid	58.48	45.21
Zm00001d044129_P001	Maize	cytosol, nucleus, plastid	52.76	42.1
CDY11773	Canola	endoplasmic reticulum, plastid, vacuole	9.9	38.24
CDY10130	Canola	plastid	32.57	35.48
CDY47264	Canola	plastid	32.19	35.06

Protein Annotations

KEGG:00500+2.7.7.27	KEGG:00520+2.7.7.27	Gene3D:2.160.10.10	MapMan:3.2.2.3	Gene3D:3.90.550.10	GO:A0A078EEQ6
InterPro:ADP-Glc_PPase	InterPro:ADP_Glu_pyroP_CS	EnsemblPlants:CDX99581	ProteinID:CDX99581	ProteinID:CDX99581.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0005975	GO:GO:0005978	GO:GO:0006091	GO:GO:0008150	GO:GO:0008152
GO:GO:0008878	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0016779	GO:GO:0019252
EnsemblPlantsGene:GSBRNA2T00108073001	InterPro:IPR029044	InterPro:NTP_transferase_dom	InterPro:Nucleotide-diphossugar_trans	PFAM:PF00483	ScanProsite:PS00808
ScanProsite:PS00809	ScanProsite:PS00810	PANTHER:PTHR43523	PANTHER:PTHR43523:SF4	MetaCyc:PWY-622	SUPFAM:SSF51161
SUPFAM:SSF53448	TIGRFAMs:TIGR02091	InterPro:Trimer_LpxA-like_sf	UniPathway:UPA00164	UniParc:UPI0004EADE85	SEG:seg

Description

BnaC04g33380D

Coordinates

chrLK031912:-:102770..106473

Molecular Weight (calculated)

58328.6 Da

IEP (calculated)

7.679

GRAVY (calculated)

-0.269

Length

525 amino acids

Sequence
(BLAST)

001: MDSSHCFATG KSSSVLPKLT FKNVDSNKFW GEKIKSNGFF KRFASDLNSN KFGNRKFKHS SVVYAVATSK NPNEAMIVKP SMFEKRKADP KNVAAIILGG
101: GNGAQLFPLT KRAATPAVPV GGCYRLIDIP MSNCINSCIN KIFVLTQFNS ASLNRHLART YFGNGINFGG GFVEVLAATQ TPGEAGKKWF QGTADAVRKF
201: LWVFEDAKNR NIENILILSG DHLYRMNYMD FVQSHVDSNA DVTLSCAPVS ESRASNFGLV KIDRGGRVTH FSEKPTGVDL KSMQTDTTML GLSHEEATDS
301: PYIASMGVYC FKTEALLDLL TQQYPTSNDF GSEVIPAAIR DQDVQGYIFR DYWEDIGTIK TFYEANLALV DERPKFEFYD PDTPFYTSPR FLPPTKTEKC
401: RMVDSIISHG CFMRECSVQR SIIGERSRLD YGVELQDTLM LGADYYQTES EIASLLAEGK VPIGIGQDTK IRKCIIDKNA KIGKNVIIMN KGDVQEADRP
501: EEGFYIRSGI TVVVEKATIQ DGTVI

Best Arabidopsis Sequence Match ( AT2G21590.2 )
(BLAST)

001: MDSSYSFALG TSSSILPKLS FRNVENRFYG EKNNNNGLCK RFGSDLGSKK FRNQKFKHGV VYAVATSDNP KKAMTVKTSM FERRKVDPQN VAAIILGGGN
101: GAKLFPLTMR AATPAVPVGG CYRLIDIPMS NCINSCINKI FVLTQFNSAS LNRHLARTYF GNGINFGGGF VEVLAATQTP GEAGKKWFQG TADAVRKFLW
201: VFEDAKNRNI ENILILSGDH LYRMNYMDFV QSHVDSNADI TLSCAPVSES RASNFGLVKI DRGGRVIHFS EKPTGVDLKS MQTDTTMLGL SHQEATDSPY
301: IASMGVYCFK TEALLNLLTR QYPSSNDFGS EVIPAAIRDH DVQGYIFRDY WEDIGTIKTF YEANLALVEE RPKFEFYDPE TPFYTSPRFL PPTKAEKCRM
401: VDSIISHGCF LRECSVQRSI IGERSRLDYG VELQDTLMLG ADYYQTESEI ASLLAEGKVP IGIGKDTKIR KCIIDKNAKI GKNVIIMNKG DVQEADRPEE
501: GFYIRSGITV IVEKATIQDG TVI

Arabidopsis Description

APL4Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SIK1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.